NLDB: Natural Ligand DataBase - A database of protein-ligand interactions in three-dimension.

The ligand in the database is a “natural ligand” generated by the knowledge of enzymatic reactions appeared in KEGG combined with a three-dimensional data of protein-analog interactions in PDB.

Natural Complex

94,708

Experimentally determined structures

Analog Complex

32,595

Transformation of a natural ligand to its analog, and then the local optimization of the embedded ligand

Ab initio Complex

72,296

Docking of a natural ligand to predicted ligand-binding sites, and then the local optimization of the embedded ligand

(Last Update: 20-Mar-2021)

Related sites

VaProS, VAriation effect on PROtein Structure and function, is a new data cloud for Structural Life Science and is the core technology to lead the collaboration between the discipline in Structural Biology and the whole Life Sciences.