Keywords
Similarity
Enrichment
NLDB: Natural Ligand DataBase - A database of protein-ligand interactions in three-dimension.
The ligand in the database is a “natural ligand” generated by the knowledge of enzymatic reactions appeared in KEGG combined with a three-dimensional data of protein-analog interactions in PDB.
Natural Complex
122,832
Experimentally determined structures
Analog Complex
current: 32,882
obsolete: 4,084
Transformation of a natural ligand to its analog, and then the local optimization of the embedded ligand
Ab initio Complex
current: 67,722
obsolete: 5,120
Docking of a natural ligand to predicted ligand-binding sites, and then the local optimization of the embedded ligand
(Last Update: 25-Jan-2024)
Related sites
VaProS, VAriation effect on PROtein Structure and function, is a new data cloud for Structural Life Science and is the core technology to lead the collaboration between the discipline in Structural Biology and the whole Life Sciences.