KEGG pathway |
Name |
hsa00010
|
Glycolysis / Gluconeogenesis
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
-
|
Disease |
Phosphoglycerate kinase 1 deficiency (PGK1D) [MIM:300653] |
|
-
|
Disease |
Pyruvate dehydrogenase E1-alpha deficiency (PDHAD) [MIM:312170] |
|
-
|
Disease |
Diabetes mellitus, permanent neonatal (PNDM) [MIM:606176] |
|
-
|
Disease |
Microphthalmia, isolated, 8 (MCOP8) [MIM:615113] |
|
rs1018955701
|
- |
- |
|
rs1041969
|
Polymorphism |
- |
|
rs104894009
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs104894015
|
Disease |
Familial hyperinsulinemic hypoglycemia 3 (HHF3) [MIM:602485] |
|
rs1126673
|
- |
- |
|
rs1131691416
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs115638369
|
- |
- |
|
rs121909534
|
Pathogenic |
HNSHA due to aldolase A deficiency [MedGen:C0272066,OMIM:611881,Orphanet:ORPHA57,SNOMED CT:111578003] |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs121918189
|
Pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005] |
|
rs121918190
|
Pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005] |
|
rs121918194
|
Pathogenic |
Glycogen storage disease, type VII [MedGen:C0017926,OMIM:232800,Orphanet:ORPHA371,SNOMED CT:89597008] |
|
rs121964925
|
Disease |
Bisphosphoglycerate mutase deficiency (BPGMD) [MIM:222800] |
|
rs121964988
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964991
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964993
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs1229984
|
Polymorphism |
- |
|
rs1256830271
|
- |
- |
|
rs1280636156
|
- |
- |
|
rs1286804191
|
Disease |
Diabetes mellitus, permanent neonatal (PNDM) [MIM:606176] |
|
rs1348837644
|
- |
- |
|
rs1360415315
|
Pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851]; not provided [MedGen:CN517202] |
|
rs1375656631
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs137852530
|
Polymorphism |
- |
|
rs137852533
|
Disease |
Phosphoglycerate kinase 1 deficiency (PGK1D) [MIM:300653] |
|
rs137852539
|
Pathogenic |
Phosphoglycerate kinase 1 deficiency [MedGen:C1970848,OMIM:300653,Orphanet:ORPHA713] |
|
rs137853258
|
Disease |
Pyruvate dehydrogenase E1-alpha deficiency (PDHAD) [MIM:312170] |
|
rs137853582
|
- |
- |
|
rs137853582
|
Pathogenic |
Hemolytic anemia, nonspherocytic, due to glucose phosphate isomerase deficiency [MedGen:C3150730,OMIM:613470,Orphanet:ORPHA712] |
|
rs138887023
|
- |
- |
|
rs140960775
|
- |
- |
|
rs141623265
|
- |
- |
|
rs143485300
|
- |
- |
|
rs1441649062
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs144723656
|
Pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851]; not provided [MedGen:CN517202] |
|
rs145078268
|
Likely pathogenic |
Hereditary fructosuria [Human Phenotype Ontology:HP:0005973,MedGen:C0016751,OMIM:229600,Orphanet:ORPHA469,SNOMED CT:20052008] |
|
rs146153216
|
- |
- |
|
rs146556418
|
- |
- |
|
rs147065275
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs1471862905
|
- |
- |
|
rs148311934
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs149408684
|
- |
- |
|
rs150939574
|
- |
- |
|
rs1555933963
|
Pathogenic |
Pyruvate dehydrogenase E1-alpha deficiency [MedGen:C1839413,OMIM:312170,Orphanet:ORPHA79243] |
|
rs17853396
|
Polymorphism |
- |
|
rs184074326
|
- |
- |
|
rs184618766
|
- |
- |
|
rs193922272
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs193922281
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922282
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922282
|
Disease |
Diabetes mellitus, permanent neonatal (PNDM) [MIM:606176] |
|
rs193922290
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922297
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs193922310
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922311
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs193922312
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922319
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922322
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922327
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922328
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs199624420
|
- |
- |
|
rs200000745
|
- |
- |
|
rs200244541
|
- |
- |
|
rs200544560
|
- |
- |
|
rs200556774
|
- |
- |
|
rs200969445
|
Pathogenic |
Oligosynaptic infertility [MedGen:C0403810,OMIM:258150,SNOMED CT:236803007] |
|
rs201321507
|
- |
- |
|
rs201745983
|
- |
- |
|
rs201934016
|
- |
- |
|
rs202226446
|
- |
- |
|
rs2066702
|
Polymorphism |
- |
|
rs2458502
|
- |
- |
|
rs28359542
|
Polymorphism |
- |
|
rs28383586
|
Polymorphism |
- |
|
rs284797
|
- |
- |
|
rs28730628
|
Polymorphism |
- |
|
rs35229514
|
- |
- |
|
rs35385902
|
Polymorphism |
- |
|
rs367861880
|
- |
- |
|
rs371767574
|
- |
- |
|
rs371807385
|
- |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs374118874
|
- |
- |
|
rs376093116
|
- |
- |
|
rs376297762
|
- |
- |
|
rs376690171
|
- |
- |
|
rs377699817
|
- |
- |
|
rs398122379
|
Disease |
Hexokinase deficiency (HK deficiency) [MIM:235700] |
|
rs539728659
|
- |
- |
|
rs541509845
|
- |
- |
|
rs545372800
|
- |
- |
|
rs547918064
|
- |
- |
|
rs555935217
|
- |
- |
|
rs56251804
|
- |
- |
|
rs566453434
|
Pathogenic/Likely pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005]; not provided [MedGen:CN517202] |
|
rs671
|
Polymorphism |
- |
|
rs74451421
|
- |
- |
|
rs747209153
|
- |
- |
|
rs747837917
|
- |
- |
|
rs748408705
|
- |
- |
|
rs750389182
|
- |
- |
|
rs750660594
|
- |
- |
|
rs751972865
|
Disease |
Bisphosphoglycerate mutase deficiency (BPGMD) [MIM:222800] |
|
rs752807581
|
- |
- |
|
rs753407393
|
- |
- |
|
rs754185312
|
- |
- |
|
rs754994587
|
- |
- |
|
rs755461904
|
- |
- |
|
rs756704521
|
- |
- |
|
rs757985056
|
- |
- |
|
rs758609113
|
Pathogenic/Likely pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005]; not provided [MedGen:CN517202] |
|
rs758737171
|
Disease |
Familial hyperinsulinemic hypoglycemia 3 (HHF3) [MIM:602485] |
|
rs75967634
|
- |
- |
|
rs759933654
|
- |
- |
|
rs760185950
|
- |
- |
|
rs760379773
|
- |
- |
|
rs760971491
|
- |
- |
|
rs762200045
|
- |
- |
|
rs763392896
|
- |
- |
|
rs767632371
|
- |
- |
|
rs768361068
|
- |
- |
|
rs769268803
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs769512330
|
- |
- |
|
rs769724893
|
Polymorphism |
- |
|
rs769763635
|
- |
- |
|
rs769879612
|
- |
- |
|
rs770331582
|
- |
- |
|
rs771107373
|
- |
- |
|
rs773503933
|
- |
- |
|
rs775111586
|
- |
- |
|
rs775156542
|
- |
- |
|
rs776400068
|
- |
- |
|
rs777019739
|
- |
- |
|
rs777954556
|
Disease |
Lactate dehydrogenase B deficiency (LDHBD) [MIM:614128] |
|
rs779006912
|
- |
- |
|
rs779314973
|
- |
- |
|
rs779828856
|
- |
- |
|
rs780715532
|
- |
- |
|
rs781110394
|
- |
- |
|
rs80356655
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs863224150
|
Pathogenic |
Pyruvate dehydrogenase E1-alpha deficiency [MedGen:C1839413,OMIM:312170,Orphanet:ORPHA79243]; not provided [MedGen:CN517202] |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs919480583
|
- |
- |
hsa00020
|
Citrate cycle (TCA cycle)
|
dbSNP |
Type |
Disease name |
|
-
|
Pathogenic |
Mitochondrial complex II deficiency [MedGen:C1855008,OMIM:252011,Orphanet:ORPHA3208]; Paragangliomas 5 [MedGen:C3279992,OMIM:614165] |
|
-
|
Disease |
Pyruvate dehydrogenase E1-alpha deficiency (PDHAD) [MIM:312170] |
|
rs1040177874
|
- |
- |
|
rs104894302
|
Likely pathogenic |
Cowden syndrome 3 [MedGen:C3554516]; Hereditary cancer-predisposing syndrome [MedGen:C0027672,SNOMED CT:699346009]; Paraganglioma and gastric stromal sarcoma [MedGen:C1847319,OMIM:606864,Orphanet:ORPHA97286]; Paragangliomas 1 [MedGen:C1868633,OMIM:168000]; Paragangliomas 1 [MedGen:C1868633,OMIM:168000]; Pheochromocytoma [Human Phenotype Ontology:HP:0002666,MedGen:C0031511,OMIM:171300] |
|
rs1057519736
|
Polymorphism |
- |
|
rs1057519736
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007] |
|
rs1057519906
|
Polymorphism |
- |
|
rs1057519906
|
Disease |
Glioma (GLM) [MIM:137800] |
|
rs1057519906
|
Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Brainstem glioma [Human Phenotype Ontology:HP:0010796,MedGen:C0677865]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Neoplasm of brain [Human Phenotype Ontology:HP:0030692,MeSH:D001932,MedGen:C0006118,SNOMED CT:126952004]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005] |
|
rs1060503769
|
Pathogenic |
Paragangliomas 1 [MedGen:C1868633,OMIM:168000]; Pheochromocytoma [Human Phenotype Ontology:HP:0002666,MedGen:C0031511,OMIM:171300] |
|
rs1200905118
|
- |
- |
|
rs1213395414
|
- |
- |
|
rs121913499
|
Unclassified |
Colorectal cancer |
|
rs121913499
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of prostate [MedGen:C0007112]; Adenoid cystic carcinoma [MeSH:D003528,MedGen:C0010606]; Astrocytoma [Human Phenotype Ontology:HP:0009592,MeSH:D001254,MedGen:C0004114,Orphanet:ORPHA94,SNOMED CT:38713004]; Brainstem glioma [Human Phenotype Ontology:HP:0010796,MedGen:C0677865]; Glioblastoma [MeSH:D005909,MedGen:C0017636,Orphanet:ORPHA360,SNOMED CT:63634009]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Medulloblastoma [Human Phenotype Ontology:HP:0002885,MeSH:D008527,MedGen:C0025149,OMIM:155255,Orphanet:ORPHA616]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of brain [Human Phenotype Ontology:HP:0030692,MeSH:D001932,MedGen:C0006118,SNOMED CT:126952004]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680] |
|
rs121913500
|
Unclassified |
A glioma sample |
|
rs121913500
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of prostate [MedGen:C0007112]; Adenoid cystic carcinoma [MeSH:D003528,MedGen:C0010606]; Astrocytoma [Human Phenotype Ontology:HP:0009592,MeSH:D001254,MedGen:C0004114,Orphanet:ORPHA94,SNOMED CT:38713004]; Brainstem glioma [Human Phenotype Ontology:HP:0010796,MedGen:C0677865]; Glioblastoma [MeSH:D005909,MedGen:C0017636,Orphanet:ORPHA360,SNOMED CT:63634009]; Glioblastoma multiforme, somatic [MedGen:C4016231]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Medulloblastoma [Human Phenotype Ontology:HP:0002885,MeSH:D008527,MedGen:C0025149,OMIM:155255,Orphanet:ORPHA616]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of brain [Human Phenotype Ontology:HP:0030692,MeSH:D001932,MedGen:C0006118,SNOMED CT:126952004]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Oligodendroglioma [MeSH:D009837,MedGen:C0751396,SNOMED CT:443936004]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680] |
|
rs121913502
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; D-2-hydroxyglutaric aciduria 2 [MedGen:C3150909,OMIM:613657]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; not provided [MedGen:CN517202] |
|
rs121913502
|
Disease |
D-2-hydroxyglutaric aciduria 2 (D2HGA2) [MIM:613657] |
|
rs121913503
|
Disease |
Glioma (GLM) [MIM:137800] |
|
rs121913503
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Brainstem glioma [Human Phenotype Ontology:HP:0010796,MedGen:C0677865]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Neoplasm of brain [Human Phenotype Ontology:HP:0030692,MeSH:D001932,MedGen:C0006118,SNOMED CT:126952004]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005] |
|
rs121913503
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Brainstem glioma [Human Phenotype Ontology:HP:0010796,MedGen:C0677865]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of brain [Human Phenotype Ontology:HP:0030692,MeSH:D001932,MedGen:C0006118,SNOMED CT:126952004]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005] |
|
rs121964988
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964991
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964993
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs1233115152
|
- |
- |
|
rs1250941205
|
- |
- |
|
rs1252881714
|
- |
- |
|
rs1256830271
|
- |
- |
|
rs1265220446
|
- |
- |
|
rs137853258
|
Disease |
Pyruvate dehydrogenase E1-alpha deficiency (PDHAD) [MIM:312170] |
|
rs141728876
|
- |
- |
|
rs148890709
|
- |
- |
|
rs148943214
|
- |
- |
|
rs1555933963
|
Pathogenic |
Pyruvate dehydrogenase E1-alpha deficiency [MedGen:C1839413,OMIM:312170,Orphanet:ORPHA79243] |
|
rs200969445
|
Pathogenic |
Oligosynaptic infertility [MedGen:C0403810,OMIM:258150,SNOMED CT:236803007] |
|
rs267606870
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037] |
|
rs267606870
|
Disease |
D-2-hydroxyglutaric aciduria 2 (D2HGA2) [MIM:613657] |
|
rs267607098
|
Pathogenic |
Mitochondrial DNA depletion syndrome 9 (encephalomyopathic with methylmalonic aciduria) [MedGen:C3151476,OMIM:245400,Orphanet:ORPHA17] |
|
rs267607099
|
Pathogenic |
Mitochondrial DNA depletion syndrome 9 (encephalomyopathic with methylmalonic aciduria) [MedGen:C3151476,OMIM:245400,Orphanet:ORPHA17] |
|
rs28359542
|
Polymorphism |
- |
|
rs28383586
|
Polymorphism |
- |
|
rs28940589
|
Disease |
Pyruvate carboxylase deficiency (PC deficiency) [MIM:266150] |
|
rs28940590
|
Disease |
Pyruvate carboxylase deficiency (PC deficiency) [MIM:266150] |
|
rs35494829
|
- |
- |
|
rs371807385
|
- |
- |
|
rs376297762
|
- |
- |
|
rs377518755
|
- |
- |
|
rs532952188
|
- |
- |
|
rs537907558
|
- |
- |
|
rs564792232
|
- |
- |
|
rs747837917
|
- |
- |
|
rs753407393
|
- |
- |
|
rs753617532
|
- |
- |
|
rs755461904
|
- |
- |
|
rs759846791
|
- |
- |
|
rs770028533
|
- |
- |
|
rs776400068
|
- |
- |
|
rs781739244
|
- |
- |
|
rs781834702
|
- |
- |
|
rs781837455
|
- |
- |
|
rs782010539
|
- |
- |
|
rs782308462
|
Disease |
Epileptic encephalopathy, early infantile, 51 (EIEE51) [MIM:617339] |
|
rs782487022
|
- |
- |
|
rs786205145
|
Likely pathogenic |
Carney triad [MedGen:C1858592,OMIM:604287,Orphanet:ORPHA139411] |
|
rs80338847
|
Pathogenic |
Hereditary Paraganglioma-Pheochromocytoma Syndromes [MedGen:C1708353,Orphanet:ORPHA29072]; Paragangliomas 1 [MedGen:C1868633,OMIM:168000] |
|
rs863224150
|
Pathogenic |
Pyruvate dehydrogenase E1-alpha deficiency [MedGen:C1839413,OMIM:312170,Orphanet:ORPHA79243]; not provided [MedGen:CN517202] |
|
rs864309499
|
Likely pathogenic |
Infantile cerebellar-retinal degeneration [MedGen:C3281192,OMIM:614559,Orphanet:ORPHA313850] |
hsa00030
|
Pentose phosphate pathway
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Anemia, non-spherocytic hemolytic, due to G6PD deficiency (NSHA) [MIM:300908] |
|
rs121909534
|
Pathogenic |
HNSHA due to aldolase A deficiency [MedGen:C0272066,OMIM:611881,Orphanet:ORPHA57,SNOMED CT:111578003] |
|
rs121918189
|
Pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005] |
|
rs121918190
|
Pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005] |
|
rs121918194
|
Pathogenic |
Glycogen storage disease, type VII [MedGen:C0017926,OMIM:232800,Orphanet:ORPHA371,SNOMED CT:89597008] |
|
rs1250029517
|
Disease |
Hemolytic anemia, non-spherocytic, due to glucose phosphate isomerase deficiency (HA-GPID) [MIM:613470] |
|
rs1280636156
|
- |
- |
|
rs1378312777
|
- |
- |
|
rs137852316
|
Disease |
Anemia, non-spherocytic hemolytic, due to G6PD deficiency (NSHA) [MIM:300908] |
|
rs137852325
|
Disease |
Anemia, non-spherocytic hemolytic, due to G6PD deficiency (NSHA) [MIM:300908] |
|
rs137852329
|
Disease |
Anemia, non-spherocytic hemolytic, due to G6PD deficiency (NSHA) [MIM:300908] |
|
rs137852349
|
Disease |
Anemia, non-spherocytic hemolytic, due to G6PD deficiency (NSHA) [MIM:300908] |
|
rs137852543
|
Disease |
Phosphoribosylpyrophosphate synthetase superactivity (PRPS1 superactivity) [MIM:300661] |
|
rs137852545
|
Disease |
Phosphoribosylpyrophosphate synthetase superactivity (PRPS1 superactivity) [MIM:300661] |
|
rs137853582
|
- |
- |
|
rs137853582
|
Disease |
Hemolytic anemia, non-spherocytic, due to glucose phosphate isomerase deficiency (HA-GPID) [MIM:613470] |
|
rs138207257
|
Disease |
Hyperoxaluria primary 3 (HP3) [MIM:613616] |
|
rs139382538
|
Disease |
Hemolytic anemia, non-spherocytic, due to glucose phosphate isomerase deficiency (HA-GPID) [MIM:613470] |
|
rs143485300
|
- |
- |
|
rs145078268
|
Likely pathogenic |
Hereditary fructosuria [Human Phenotype Ontology:HP:0005973,MedGen:C0016751,OMIM:229600,Orphanet:ORPHA469,SNOMED CT:20052008] |
|
rs1556381145
|
- |
- |
|
rs1557230580
|
- |
- |
|
rs184658792
|
- |
- |
|
rs189919790
|
- |
- |
|
rs200529020
|
Likely pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs200544560
|
- |
- |
|
rs374714195
|
- |
- |
|
rs376093116
|
- |
- |
|
rs376690171
|
- |
- |
|
rs387906468
|
Pathogenic, other |
Anemia, nonspherocytic hemolytic, due to G6PD deficiency [MedGen:C2720289,OMIM:300908,Orphanet:ORPHA466026]; G6PD PUERTO LIMON [na] |
|
rs541509845
|
- |
- |
|
rs555935217
|
- |
- |
|
rs566453434
|
Pathogenic/Likely pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005]; not provided [MedGen:CN517202] |
|
rs746419489
|
Pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs748408705
|
- |
- |
|
rs749994897
|
- |
- |
|
rs752807581
|
- |
- |
|
rs754049561
|
- |
- |
|
rs756489804
|
Pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs756704521
|
- |
- |
|
rs758609113
|
Pathogenic/Likely pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005]; not provided [MedGen:CN517202] |
|
rs760379773
|
- |
- |
|
rs762200045
|
- |
- |
|
rs764224799
|
- |
- |
|
rs76645461
|
Disease |
Anemia, non-spherocytic hemolytic, due to G6PD deficiency (NSHA) [MIM:300908] |
|
rs767405535
|
Pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs769512330
|
- |
- |
|
rs772424772
|
- |
- |
|
rs780715532
|
- |
- |
|
rs781110394
|
- |
- |
|
rs78160297
|
- |
- |
|
rs782314561
|
- |
- |
|
rs782412869
|
- |
- |
|
rs782453942
|
- |
- |
|
rs78478128
|
Disease |
Anemia, non-spherocytic hemolytic, due to G6PD deficiency (NSHA) [MIM:300908] |
|
rs796052088
|
Pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs80338675
|
Disease |
ARTS syndrome (ARTS) [MIM:301835] |
|
rs869025593
|
Pathogenic |
Arts syndrome [MedGen:C0796028,OMIM:301835,Orphanet:ORPHA1187]; Deafness, X-linked 1 [MedGen:C1844677,OMIM:304500] |
hsa00040
|
Pentose and glucuronate interconversions
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
46,XY sex reversal 8 (SRXY8) [MIM:614279] |
|
-
|
Pathogenic |
46,XY sex reversal 8 [Gene:6994,MedGen:C1839840,OMIM:614279,Orphanet:ORPHA443087] |
|
rs11666105
|
- |
- |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs1226928039
|
- |
- |
|
rs1239594775
|
- |
- |
|
rs1294400653
|
- |
- |
|
rs1348837644
|
- |
- |
|
rs138887023
|
- |
- |
|
rs140112768
|
- |
- |
|
rs1438253227
|
- |
- |
|
rs146556418
|
- |
- |
|
rs200000745
|
- |
- |
|
rs200908381
|
- |
- |
|
rs201321507
|
- |
- |
|
rs201835306
|
- |
- |
|
rs2234622
|
Polymorphism |
- |
|
rs2234625
|
- |
- |
|
rs2270941
|
- |
- |
|
rs2458502
|
- |
- |
|
rs2959896
|
- |
- |
|
rs370245703
|
- |
- |
|
rs370312954
|
- |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs372696285
|
- |
- |
|
rs372885680
|
- |
- |
|
rs5054
|
Polymorphism |
- |
|
rs5056
|
Polymorphism |
- |
|
rs556400964
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs559792550
|
- |
- |
|
rs749485571
|
- |
- |
|
rs753830206
|
- |
- |
|
rs755264844
|
- |
- |
|
rs756117252
|
- |
- |
|
rs756827825
|
- |
- |
|
rs758625590
|
- |
- |
|
rs762922297
|
- |
- |
|
rs765892707
|
- |
- |
|
rs771427619
|
- |
- |
|
rs772424772
|
- |
- |
|
rs772620790
|
- |
- |
|
rs773503933
|
- |
- |
|
rs773593573
|
- |
- |
|
rs773802985
|
- |
- |
|
rs775137066
|
- |
- |
|
rs781200594
|
- |
- |
|
rs782266548
|
- |
- |
|
rs782328441
|
- |
- |
|
rs79233786
|
- |
- |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs865845501
|
- |
- |
hsa00051
|
Fructose and mannose metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
-
|
Disease |
Diabetes mellitus, permanent neonatal (PNDM) [MIM:606176] |
|
rs104893643
|
Disease |
Fructosuria (FRUCT) [MIM:229800] |
|
rs104893644
|
Disease |
Fructosuria (FRUCT) [MIM:229800] |
|
rs1063554
|
- |
- |
|
rs121909533
|
Pathogenic |
HNSHA due to aldolase A deficiency [MedGen:C0272066,OMIM:611881,Orphanet:ORPHA57,SNOMED CT:111578003] |
|
rs121909534
|
Pathogenic |
HNSHA due to aldolase A deficiency [MedGen:C0272066,OMIM:611881,Orphanet:ORPHA57,SNOMED CT:111578003] |
|
rs121918189
|
Pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005] |
|
rs121918190
|
Pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005] |
|
rs121918194
|
Pathogenic |
Glycogen storage disease, type VII [MedGen:C0017926,OMIM:232800,Orphanet:ORPHA371,SNOMED CT:89597008] |
|
rs1226884383
|
- |
- |
|
rs1280636156
|
- |
- |
|
rs1337350024
|
- |
- |
|
rs1375656631
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs137853582
|
- |
- |
|
rs137853582
|
Pathogenic |
Hemolytic anemia, nonspherocytic, due to glucose phosphate isomerase deficiency [MedGen:C3150730,OMIM:613470,Orphanet:ORPHA712] |
|
rs1379500249
|
- |
- |
|
rs138367050
|
- |
- |
|
rs139620518
|
- |
- |
|
rs139948811
|
- |
- |
|
rs139998516
|
- |
- |
|
rs143026820
|
- |
- |
|
rs143485300
|
- |
- |
|
rs1438253227
|
- |
- |
|
rs1441649062
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs145078268
|
Likely pathogenic |
Hereditary fructosuria [Human Phenotype Ontology:HP:0005973,MedGen:C0016751,OMIM:229600,Orphanet:ORPHA469,SNOMED CT:20052008] |
|
rs146768602
|
- |
- |
|
rs148239543
|
- |
- |
|
rs148311934
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs148627840
|
- |
- |
|
rs150279875
|
- |
- |
|
rs181651478
|
- |
- |
|
rs190292776
|
- |
- |
|
rs193922297
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs193922303
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922312
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922319
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922322
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922327
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922328
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs199878471
|
- |
- |
|
rs200544560
|
- |
- |
|
rs201037118
|
- |
- |
|
rs201998835
|
- |
- |
|
rs2959896
|
- |
- |
|
rs367815523
|
- |
- |
|
rs376093116
|
- |
- |
|
rs376690171
|
- |
- |
|
rs398122379
|
Disease |
Hexokinase deficiency (HK deficiency) [MIM:235700] |
|
rs541509845
|
- |
- |
|
rs554595347
|
- |
- |
|
rs555935217
|
- |
- |
|
rs562642551
|
- |
- |
|
rs566453434
|
Pathogenic/Likely pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005]; not provided [MedGen:CN517202] |
|
rs747367976
|
- |
- |
|
rs748408705
|
- |
- |
|
rs750714549
|
- |
- |
|
rs751012777
|
- |
- |
|
rs752807581
|
- |
- |
|
rs754185312
|
- |
- |
|
rs754994587
|
- |
- |
|
rs755264844
|
- |
- |
|
rs756704521
|
- |
- |
|
rs758609113
|
Pathogenic/Likely pathogenic |
Fructose-biphosphatase deficiency [MedGen:C0016756,OMIM:229700,Orphanet:ORPHA348,SNOMED CT:28183005]; not provided [MedGen:CN517202] |
|
rs758816952
|
- |
- |
|
rs760068551
|
- |
- |
|
rs760379773
|
- |
- |
|
rs760807537
|
- |
- |
|
rs762200045
|
- |
- |
|
rs769268803
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs769512330
|
- |
- |
|
rs771553926
|
- |
- |
|
rs775137066
|
- |
- |
|
rs775924004
|
- |
- |
|
rs779828856
|
- |
- |
|
rs780715532
|
- |
- |
|
rs781078287
|
- |
- |
|
rs781110394
|
- |
- |
|
rs80356655
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs943355847
|
- |
- |
|
rs992781636
|
- |
- |
hsa00052
|
Galactose metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
-
|
Disease |
Galactosemia II (GALCT2) [MIM:230200] |
|
-
|
Disease |
GM1-gangliosidosis 1 (GM1G1) [MIM:230500] |
|
-
|
Disease |
GM1-gangliosidosis 2 (GM1G2) [MIM:230600] |
|
-
|
Disease |
GM1-gangliosidosis 3 (GM1G3) [MIM:230650] |
|
-
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
-
|
Disease |
Mucopolysaccharidosis 4B (MPS4B) [MIM:253010] |
|
-
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
-
|
Likely pathogenic |
Fabry disease [Human Phenotype Ontology:HP:0001071,MedGen:C0002986,OMIM:301500,Orphanet:ORPHA324,SNOMED CT:16652001]; not provided [MedGen:CN517202] |
|
-
|
Disease |
Diabetes mellitus, permanent neonatal (PNDM) [MIM:606176] |
|
rs104894009
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs104894577
|
Pathogenic |
Deficiency of galactokinase [MedGen:C0268155,OMIM:230200,Orphanet:ORPHA79237,SNOMED CT:124302001] |
|
rs104894827
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs104894832
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs104894835
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs104894840
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs104894841
|
Pathogenic |
Fabry disease [Human Phenotype Ontology:HP:0001071,MedGen:C0002986,OMIM:301500,Orphanet:ORPHA324,SNOMED CT:16652001]; not provided [MedGen:CN517202] |
|
rs104894844
|
Pathogenic |
Fabry disease [Human Phenotype Ontology:HP:0001071,MedGen:C0002986,OMIM:301500,Orphanet:ORPHA324,SNOMED CT:16652001] |
|
rs104894845
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs1057516600
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs1057521047
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs111033648
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033652
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033669
|
- |
- |
|
rs111033669
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033715
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033720
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033725
|
Pathogenic |
Deficiency of UDPglucose-hexose-1-phosphate uridylyltransferase [MedGen:C0268151,OMIM:230400,Orphanet:ORPHA79239,SNOMED CT:124354006]; not provided [MedGen:CN517202] |
|
rs111033800
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033802
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033806
|
Pathogenic |
Deficiency of UDPglucose-hexose-1-phosphate uridylyltransferase [MedGen:C0268151,OMIM:230400,Orphanet:ORPHA79239,SNOMED CT:124354006] |
|
rs111033808
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033809
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033810
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033812
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033814
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033815
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033828
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033832
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs111033844
|
Pathogenic |
Deficiency of UDPglucose-hexose-1-phosphate uridylyltransferase [MedGen:C0268151,OMIM:230400,Orphanet:ORPHA79239,SNOMED CT:124354006] |
|
rs1131691416
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs113173389
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs115413295
|
- |
- |
|
rs121907937
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs121908047
|
Disease |
Epimerase-deficiency galactosemia (EDG) [MIM:230350] |
|
rs121918194
|
Pathogenic |
Glycogen storage disease, type VII [MedGen:C0017926,OMIM:232800,Orphanet:ORPHA371,SNOMED CT:89597008] |
|
rs1280636156
|
- |
- |
|
rs1286804191
|
Disease |
Diabetes mellitus, permanent neonatal (PNDM) [MIM:606176] |
|
rs1360415315
|
Pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851]; not provided [MedGen:CN517202] |
|
rs1375656631
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs137853860
|
Disease |
Epimerase-deficiency galactosemia (EDG) [MIM:230350] |
|
rs137853861
|
- |
- |
|
rs137853861
|
Disease |
Epimerase-deficiency galactosemia (EDG) [MIM:230350] |
|
rs140826989
|
Pathogenic/Likely pathogenic |
Glycogen storage disease, type II [MedGen:C0017921,OMIM:232300,Orphanet:ORPHA365,SNOMED CT:124462004,SNOMED CT:237967002]; not provided [MedGen:CN517202] |
|
rs141533320
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs142481170
|
- |
- |
|
rs142752477
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs143485300
|
- |
- |
|
rs1441649062
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs144723656
|
Pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851]; not provided [MedGen:CN517202] |
|
rs148311934
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs1555987101
|
Pathogenic |
Fabry disease [Human Phenotype Ontology:HP:0001071,MedGen:C0002986,OMIM:301500,Orphanet:ORPHA324,SNOMED CT:16652001] |
|
rs1800299
|
Polymorphism |
- |
|
rs193922272
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs193922281
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922282
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922282
|
Disease |
Diabetes mellitus, permanent neonatal (PNDM) [MIM:606176] |
|
rs193922290
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922297
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs193922310
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922311
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs193922312
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922319
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922322
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922327
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs193922328
|
Likely pathogenic |
Maturity-onset diabetes of the young, type 2 [MedGen:C1841962,OMIM:125851] |
|
rs200544560
|
- |
- |
|
rs28935487
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs28935491
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs28935492
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs28940868
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs367543259
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs368438393
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs371517491
|
- |
- |
|
rs371517491
|
Likely pathogenic |
Deficiency of galactokinase [MedGen:C0268155,OMIM:230200,Orphanet:ORPHA79237,SNOMED CT:124302001] |
|
rs375310352
|
- |
- |
|
rs375690568
|
Disease |
Galactosemia II (GALCT2) [MIM:230200] |
|
rs376663785
|
Pathogenic/Likely pathogenic |
GM1 gangliosidosis [MedGen:C0085131,Orphanet:ORPHA354]; GM1 gangliosidosis type 2 [MedGen:C0268272,OMIM:230600,Orphanet:ORPHA79256,SNOMED CT:18756002]; Gangliosidosis GM1 type 3 [MedGen:C0268273,OMIM:230650,Orphanet:ORPHA79257]; Inborn genetic diseases [MeSH:D030342,MedGen:C0950123]; Infantile GM1 gangliosidosis [MedGen:C0268271,OMIM:230500,Orphanet:ORPHA79255,SNOMED CT:238026007]; Infantile GM1 gangliosidosis [MedGen:C0268271,OMIM:230500,Orphanet:ORPHA79255,SNOMED CT:238026007]; Mucopolysaccharidosis, MPS-IV-B [MedGen:C0086652,OMIM:253010,Orphanet:ORPHA309310,SNOMED CT:238044004]; Mucopolysaccharidosis, MPS-IV-B [MedGen:C0086652,OMIM:253010,Orphanet:ORPHA309310,SNOMED CT:238044004]; not provided [MedGen:CN517202] |
|
rs377544304
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs398122379
|
Disease |
Hexokinase deficiency (HK deficiency) [MIM:235700] |
|
rs398123174
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs5054
|
Polymorphism |
- |
|
rs5056
|
Polymorphism |
- |
|
rs533469192
|
- |
- |
|
rs549029029
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs72555362
|
Pathogenic |
Mucopolysaccharidosis, MPS-IV-B [MedGen:C0086652,OMIM:253010,Orphanet:ORPHA309310,SNOMED CT:238044004] |
|
rs72555364
|
Pathogenic |
Mucopolysaccharidosis, MPS-IV-B [MedGen:C0086652,OMIM:253010,Orphanet:ORPHA309310,SNOMED CT:238044004] |
|
rs727503942
|
- |
- |
|
rs727505292
|
Unclassified |
Fabry disease (FD) [MIM:301500] |
|
rs730880451
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs748225017
|
- |
- |
|
rs75391579
|
Disease |
Galactosemia (GALCT) [MIM:230400] |
|
rs754185312
|
- |
- |
|
rs754967473
|
- |
- |
|
rs754967473
|
Disease |
Galactosemia II (GALCT2) [MIM:230200] |
|
rs754994587
|
- |
- |
|
rs757111744
|
- |
- |
|
rs757111744
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs758737171
|
Disease |
Familial hyperinsulinemic hypoglycemia 3 (HHF3) [MIM:602485] |
|
rs764670084
|
- |
- |
|
rs764670084
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs768722066
|
- |
- |
|
rs769268803
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs769512330
|
- |
- |
|
rs772883420
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs773416476
|
Polymorphism |
- |
|
rs775137066
|
- |
- |
|
rs778418246
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs779828856
|
- |
- |
|
rs780715532
|
- |
- |
|
rs781110394
|
- |
- |
|
rs786204720
|
Disease |
Glycogen storage disease 2 (GSD2) [MIM:232300] |
|
rs797044774
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs80356655
|
Disease |
Maturity-onset diabetes of the young 2 (MODY2) [MIM:125851] |
|
rs869312136
|
Unclassified |
Fabry disease (FD) [MIM:301500] |
|
rs869312137
|
Unclassified |
Fabry disease (FD) [MIM:301500] |
|
rs869312138
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312153
|
Unclassified |
Fabry disease (FD) [MIM:301500] |
|
rs869312159
|
Unclassified |
Fabry disease (FD) [MIM:301500] |
|
rs869312160
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312161
|
Unclassified |
Fabry disease (FD) [MIM:301500] |
|
rs869312163
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312214
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312254
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312256
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312270
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312318
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312393
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312396
|
Likely pathogenic |
Fabry disease [Human Phenotype Ontology:HP:0001071,MedGen:C0002986,OMIM:301500,Orphanet:ORPHA324,SNOMED CT:16652001] |
|
rs869312399
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs869312407
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs886041315
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs886044845
|
Disease |
Fabry disease (FD) [MIM:301500] |
|
rs981970282
|
- |
- |
hsa00053
|
Ascorbate and aldarate metabolism
|
dbSNP |
Type |
Disease name |
|
rs11509436
|
Polymorphism |
- |
|
rs11509438
|
Polymorphism |
- |
|
rs11509439
|
Polymorphism |
- |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs1239594775
|
- |
- |
|
rs1292504288
|
- |
- |
|
rs1348837644
|
- |
- |
|
rs138887023
|
- |
- |
|
rs1454273149
|
- |
- |
|
rs146556418
|
- |
- |
|
rs148563375
|
- |
- |
|
rs151151350
|
- |
- |
|
rs200000745
|
- |
- |
|
rs200602157
|
- |
- |
|
rs201321507
|
- |
- |
|
rs201522765
|
- |
- |
|
rs201835306
|
- |
- |
|
rs2458502
|
- |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs556400964
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs61755740
|
- |
- |
|
rs757707616
|
- |
- |
|
rs762922297
|
- |
- |
|
rs773503933
|
- |
- |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
hsa00061
|
Fatty acid biosynthesis
|
dbSNP |
Type |
Disease name |
|
rs1018160528
|
- |
- |
|
rs113931914
|
Polymorphism |
- |
|
rs1357271377
|
Unclassified |
A colorectal cancer sample |
|
rs139276176
|
- |
- |
|
rs144457204
|
- |
- |
|
rs1464624373
|
- |
- |
|
rs148840593
|
- |
- |
|
rs149224679
|
- |
- |
|
rs17848945
|
- |
- |
|
rs200775885
|
- |
- |
|
rs200840955
|
- |
- |
|
rs200842352
|
- |
- |
|
rs201182683
|
- |
- |
|
rs201551371
|
- |
- |
|
rs368171697
|
- |
- |
|
rs370433029
|
- |
- |
|
rs45489599
|
- |
- |
|
rs536230471
|
- |
- |
|
rs539939995
|
- |
- |
|
rs546995952
|
- |
- |
|
rs549257982
|
- |
- |
|
rs557050126
|
- |
- |
|
rs748930040
|
- |
- |
|
rs750541652
|
- |
- |
|
rs752767411
|
- |
- |
|
rs753704338
|
- |
- |
|
rs755372392
|
- |
- |
|
rs755971315
|
- |
- |
|
rs756482744
|
- |
- |
|
rs758221850
|
- |
- |
|
rs758552144
|
- |
- |
|
rs761208637
|
- |
- |
|
rs766712508
|
- |
- |
|
rs766955776
|
- |
- |
|
rs767347856
|
- |
- |
|
rs769948189
|
- |
- |
|
rs775705403
|
- |
- |
|
rs80133417
|
- |
- |
|
rs887438250
|
- |
- |
|
rs9890362
|
- |
- |
hsa00062
|
Fatty acid elongation
|
dbSNP |
Type |
Disease name |
|
-
|
Pathogenic |
46,XY sex reversal 8 [Gene:6994,MedGen:C1839840,OMIM:614279,Orphanet:ORPHA443087] |
|
rs104886492
|
Unclassified |
HDS10 mitochondrial disease (HSD10MD) [MIM:300438] |
|
rs1057519286
|
Pathogenic |
Dystonia, childhood-onset, with optic atrophy and basal ganglia abnormalities [MedGen:C4310634,OMIM:617282] |
|
rs112441786
|
- |
- |
|
rs1128400
|
- |
- |
|
rs11544658
|
Polymorphism |
- |
|
rs120074140
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs120074141
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs120074145
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs1202368985
|
- |
- |
|
rs1245431558
|
- |
- |
|
rs1256975692
|
- |
- |
|
rs1355672978
|
- |
- |
|
rs137852695
|
Pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329]; Inborn genetic diseases [MeSH:D030342,MedGen:C0950123]; Neuronal ceroid lipofuscinosis [MedGen:C0027877,OMIM:214200,Orphanet:ORPHA216,SNOMED CT:42012007]; not provided [MedGen:CN517202] |
|
rs137852696
|
Pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329]; not provided [MedGen:CN517202] |
|
rs137852697
|
Pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs137852698
|
Pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs137852700
|
- |
- |
|
rs137852700
|
Pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329]; History of neurodevelopmental disorder [MedGen:C2711754]; Neuronal Ceroid-Lipofuscinosis, Recessive [MedGen:CN239323]; Neuronal ceroid lipofuscinosis [MedGen:C0027877,OMIM:214200,Orphanet:ORPHA216,SNOMED CT:42012007]; not provided [MedGen:CN517202] |
|
rs137852702
|
Pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs137853096
|
Disease |
D-bifunctional protein deficiency (DBPD) [MIM:261515] |
|
rs137853101
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs137853102
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs140387106
|
- |
- |
|
rs144457204
|
- |
- |
|
rs147168294
|
- |
- |
|
rs148412181
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329]; not provided [MedGen:CN517202] |
|
rs149033118
|
- |
- |
|
rs199695749
|
- |
- |
|
rs200908381
|
- |
- |
|
rs202015012
|
- |
- |
|
rs202093592
|
- |
- |
|
rs370245703
|
- |
- |
|
rs370433029
|
- |
- |
|
rs371834662
|
- |
- |
|
rs375253960
|
- |
- |
|
rs386833626
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833627
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833631
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833647
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833648
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833649
|
Pathogenic/Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833650
|
Pathogenic/Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329]; not provided [MedGen:CN517202] |
|
rs386833654
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833655
|
- |
- |
|
rs386833655
|
Pathogenic/Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329]; not provided [MedGen:CN517202] |
|
rs386833656
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833657
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833658
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833661
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833662
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833663
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833665
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329]; not provided [MedGen:CN517202] |
|
rs386833666
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833668
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833669
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs386833670
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs532190594
|
Pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs545752791
|
- |
- |
|
rs556081405
|
- |
- |
|
rs56069624
|
- |
- |
|
rs566644923
|
- |
- |
|
rs74428123
|
- |
- |
|
rs748303093
|
Likely pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs749485571
|
- |
- |
|
rs753816946
|
- |
- |
|
rs756168037
|
- |
- |
|
rs759218713
|
Disease |
Dystonia, childhood-onset, with optic atrophy and basal ganglia abnormalities (DYTOABG) [MIM:617282] |
|
rs763463911
|
- |
- |
|
rs766961054
|
- |
- |
|
rs768550964
|
- |
- |
|
rs772087249
|
- |
- |
|
rs772780687
|
- |
- |
|
rs774809147
|
- |
- |
|
rs776965057
|
- |
- |
|
rs779634821
|
- |
- |
|
rs781200594
|
- |
- |
|
rs782266548
|
- |
- |
|
rs782328441
|
- |
- |
|
rs796052925
|
Pathogenic/Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329]; not provided [MedGen:CN517202] |
|
rs80133417
|
- |
- |
|
rs866346652
|
- |
- |
|
rs878853322
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs878853323
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs878853324
|
Likely pathogenic |
Ceroid lipofuscinosis neuronal 1 [MedGen:C1850451,OMIM:256730,Orphanet:ORPHA228329] |
|
rs886037927
|
Likely pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
|
rs887438250
|
- |
- |
hsa00071
|
Fatty acid degradation
|
dbSNP |
Type |
Disease name |
|
-
|
Likely pathogenic |
Medium-chain acyl-coenzyme A dehydrogenase deficiency [MedGen:C0220710,OMIM:201450,Orphanet:ORPHA42,SNOMED CT:128596003] |
|
-
|
Disease |
Microphthalmia, isolated, 8 (MCOP8) [MIM:615113] |
|
rs1041969
|
Polymorphism |
- |
|
rs104886492
|
Unclassified |
HDS10 mitochondrial disease (HSD10MD) [MIM:300438] |
|
rs1057516564
|
Likely pathogenic |
Medium-chain acyl-coenzyme A dehydrogenase deficiency [MedGen:C0220710,OMIM:201450,Orphanet:ORPHA42,SNOMED CT:128596003] |
|
rs1057517492
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, lethal neonatal [MedGen:C1833518,OMIM:608836,Orphanet:ORPHA228308]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302] |
|
rs1057517517
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, lethal neonatal [MedGen:C1833518,OMIM:608836,Orphanet:ORPHA228308]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302] |
|
rs1126673
|
- |
- |
|
rs1135640
|
- |
- |
|
rs115638369
|
- |
- |
|
rs118204090
|
Pathogenic |
Pseudoneonatal adrenoleukodystrophy [MedGen:C1849678,OMIM:264470,Orphanet:ORPHA2971] |
|
rs118204091
|
Pathogenic |
Pseudoneonatal adrenoleukodystrophy [MedGen:C1849678,OMIM:264470,Orphanet:ORPHA2971] |
|
rs118204092
|
Pathogenic |
Pseudoneonatal adrenoleukodystrophy [MedGen:C1849678,OMIM:264470,Orphanet:ORPHA2971] |
|
rs120074140
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs120074141
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs120074145
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs1202368985
|
- |
- |
|
rs121434275
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434278
|
- |
- |
|
rs121434278
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434279
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434281
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434283
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs121918528
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency [MedGen:C0342790,Orphanet:ORPHA157,SNOMED CT:238002005]; Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, lethal neonatal [MedGen:C1833518,OMIM:608836,Orphanet:ORPHA228308]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302] |
|
rs1229984
|
Polymorphism |
- |
|
rs1256975692
|
- |
- |
|
rs137853096
|
Disease |
D-bifunctional protein deficiency (DBPD) [MIM:261515] |
|
rs137853101
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs137853102
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs1401737158
|
- |
- |
|
rs145712373
|
- |
- |
|
rs1462472677
|
Likely pathogenic |
Medium-chain acyl-coenzyme A dehydrogenase deficiency [MedGen:C0220710,OMIM:201450,Orphanet:ORPHA42,SNOMED CT:128596003] |
|
rs1466072211
|
- |
- |
|
rs1469108369
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305] |
|
rs1471862905
|
- |
- |
|
rs149408684
|
- |
- |
|
rs150321966
|
Pathogenic/Likely pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277]; not provided [MedGen:CN517202] |
|
rs1553169771
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305] |
|
rs1553170005
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305] |
|
rs1799821
|
- |
- |
|
rs1799822
|
- |
- |
|
rs192275019
|
- |
- |
|
rs199695749
|
- |
- |
|
rs201865375
|
- |
- |
|
rs201865375
|
Pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277] |
|
rs201934016
|
- |
- |
|
rs201996784
|
- |
- |
|
rs202015012
|
- |
- |
|
rs2066702
|
Polymorphism |
- |
|
rs2229291
|
- |
- |
|
rs28730628
|
Polymorphism |
- |
|
rs28936674
|
- |
- |
|
rs28936674
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency [MedGen:C0342790,Orphanet:ORPHA157,SNOMED CT:238002005]; Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305] |
|
rs35385902
|
Polymorphism |
- |
|
rs367861880
|
- |
- |
|
rs367902441
|
- |
- |
|
rs371582393
|
Likely pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277] |
|
rs371834662
|
- |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs3744032
|
- |
- |
|
rs375032130
|
Pathogenic/Likely pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277]; not provided [MedGen:CN517202] |
|
rs377699817
|
- |
- |
|
rs532190594
|
Pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs547918064
|
- |
- |
|
rs56251804
|
- |
- |
|
rs574370650
|
- |
- |
|
rs74315293
|
- |
- |
|
rs74315293
|
Pathogenic |
Carnitine palmitoyltransferase II deficiency [MedGen:C0342790,Orphanet:ORPHA157,SNOMED CT:238002005]; Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302] |
|
rs74315294
|
- |
- |
|
rs74315294
|
Pathogenic |
Carnitine palmitoyltransferase II deficiency [MedGen:C0342790,Orphanet:ORPHA157,SNOMED CT:238002005]; Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, lethal neonatal [MedGen:C1833518,OMIM:608836,Orphanet:ORPHA228308]; Carnitine palmitoyltransferase II deficiency, lethal neonatal [MedGen:C1833518,OMIM:608836,Orphanet:ORPHA228308]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302]; Encephalopathy, acute, infection-induced, 4, susceptibility to [MedGen:C3280160,OMIM:614212,Orphanet:ORPHA263524]; Inborn genetic diseases [MeSH:D030342,MedGen:C0950123]; Rhabdomyolysis [Human Phenotype Ontology:HP:0003201,MedGen:C0035410]; not provided [MedGen:CN517202] |
|
rs74315295
|
- |
- |
|
rs74315295
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency [MedGen:C0342790,Orphanet:ORPHA157,SNOMED CT:238002005]; Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, lethal neonatal [MedGen:C1833518,OMIM:608836,Orphanet:ORPHA228308]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302] |
|
rs74315300
|
Pathogenic |
Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302] |
|
rs74428123
|
- |
- |
|
rs74451421
|
- |
- |
|
rs745423719
|
- |
- |
|
rs747209153
|
- |
- |
|
rs748303093
|
Likely pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs750389182
|
- |
- |
|
rs751557097
|
- |
- |
|
rs752737849
|
- |
- |
|
rs753816946
|
- |
- |
|
rs754386565
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, lethal neonatal [MedGen:C1833518,OMIM:608836,Orphanet:ORPHA228308]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302] |
|
rs756168037
|
- |
- |
|
rs756326862
|
- |
- |
|
rs756931329
|
Pathogenic/Likely pathogenic |
Carnitine palmitoyltransferase II deficiency [MedGen:C0342790,Orphanet:ORPHA157,SNOMED CT:238002005]; Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305] |
|
rs758723288
|
Likely pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277] |
|
rs75967634
|
- |
- |
|
rs761438840
|
Likely pathogenic |
Carnitine palmitoyltransferase II deficiency, infantile [MedGen:C1833511,OMIM:600649,Orphanet:ORPHA228305]; Carnitine palmitoyltransferase II deficiency, lethal neonatal [MedGen:C1833518,OMIM:608836,Orphanet:ORPHA228308]; Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced [MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302] |
|
rs763392896
|
- |
- |
|
rs769763635
|
- |
- |
|
rs772087249
|
- |
- |
|
rs773503933
|
- |
- |
|
rs773966429
|
- |
- |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs875989867
|
Pathogenic |
Medium-chain acyl-coenzyme A dehydrogenase deficiency [MedGen:C0220710,OMIM:201450,Orphanet:ORPHA42,SNOMED CT:128596003] |
|
rs886037927
|
Likely pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
hsa00072
|
Synthesis and degradation of ketone bodies
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Succinyl-CoA:3-oxoacid CoA transferase deficiency (SCOTD) [MIM:245050] |
|
-
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs1014048269
|
- |
- |
|
rs120074141
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs121909301
|
Disease |
Succinyl-CoA:3-oxoacid CoA transferase deficiency (SCOTD) [MIM:245050] |
|
rs121964997
|
Pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007]; not provided [MedGen:CN517202] |
|
rs1265872256
|
- |
- |
|
rs1289541397
|
- |
- |
|
rs1327401976
|
Disease |
Succinyl-CoA:3-oxoacid CoA transferase deficiency (SCOTD) [MIM:245050] |
|
rs1357942068
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs137852640
|
Pathogenic |
mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase deficiency [MedGen:C2751532,OMIM:605911,Orphanet:ORPHA35701] |
|
rs1467902610
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs1553132209
|
Pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007] |
|
rs199587895
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs200189529
|
Likely pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007] |
|
rs200955062
|
- |
- |
|
rs202015012
|
- |
- |
|
rs368688262
|
- |
- |
|
rs371834662
|
- |
- |
|
rs727503963
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs748303093
|
Likely pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs748337518
|
- |
- |
|
rs753816946
|
- |
- |
|
rs755255464
|
- |
- |
|
rs760106433
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs764039230
|
- |
- |
|
rs765198174
|
Likely pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007] |
|
rs770225915
|
Likely pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007] |
hsa00100
|
Steroid biosynthesis
|
dbSNP |
Type |
Disease name |
|
-
|
Pathogenic |
46,XY sex reversal 8 [Gene:6994,MedGen:C1839840,OMIM:614279,Orphanet:ORPHA443087] |
|
-
|
Pathogenic |
HYPOTRICHOSIS 14 [MedGen:CN258053,OMIM:618275] |
|
rs1202368985
|
- |
- |
|
rs137853096
|
Pathogenic/Likely pathogenic |
Bifunctional peroxisomal enzyme deficiency [MedGen:C0342870,OMIM:261515,Orphanet:ORPHA300,SNOMED CT:238068007]; Bifunctional peroxisomal enzyme deficiency [MedGen:C0342870,OMIM:261515,Orphanet:ORPHA300,SNOMED CT:238068007]; Perrault syndrome [MedGen:C0685838,Orphanet:ORPHA2855,SNOMED CT:93466004]; not provided [MedGen:CN517202] |
|
rs138781417
|
- |
- |
|
rs139230476
|
- |
- |
|
rs144457204
|
- |
- |
|
rs17134592
|
- |
- |
|
rs200217031
|
- |
- |
|
rs200908381
|
- |
- |
|
rs201022112
|
- |
- |
|
rs370245703
|
- |
- |
|
rs370433029
|
- |
- |
|
rs371623501
|
- |
- |
|
rs376669118
|
- |
- |
|
rs4731
|
Polymorphism |
- |
|
rs570650527
|
- |
- |
|
rs746780985
|
- |
- |
|
rs749461746
|
- |
- |
|
rs749485571
|
- |
- |
|
rs751451775
|
- |
- |
|
rs754529217
|
- |
- |
|
rs764164796
|
- |
- |
|
rs768550964
|
- |
- |
|
rs772780687
|
- |
- |
|
rs778046889
|
- |
- |
|
rs779490029
|
- |
- |
|
rs781200594
|
- |
- |
|
rs782266548
|
- |
- |
|
rs782328441
|
- |
- |
|
rs782421321
|
- |
- |
|
rs80133417
|
- |
- |
|
rs864622780
|
Disease |
Cataract 44 (CTRCT44) [MIM:616509] |
|
rs887438250
|
- |
- |
hsa00120
|
Primary bile acid biosynthesis
|
dbSNP |
Type |
Disease name |
|
-
|
Pathogenic |
46,XY sex reversal 8 [Gene:6994,MedGen:C1839840,OMIM:614279,Orphanet:ORPHA443087] |
|
rs104886492
|
Unclassified |
HDS10 mitochondrial disease (HSD10MD) [MIM:300438] |
|
rs1057909
|
Polymorphism |
- |
|
rs1057910
|
Polymorphism |
- |
|
rs112441786
|
- |
- |
|
rs117111102
|
- |
- |
|
rs1202368985
|
- |
- |
|
rs12414460
|
- |
- |
|
rs1363857729
|
- |
- |
|
rs137853096
|
Disease |
D-bifunctional protein deficiency (DBPD) [MIM:261515] |
|
rs137853101
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs137853102
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs140387106
|
- |
- |
|
rs141489852
|
- |
- |
|
rs147168294
|
- |
- |
|
rs1486164573
|
- |
- |
|
rs149033118
|
- |
- |
|
rs1799853
|
Polymorphism |
- |
|
rs200346442
|
- |
- |
|
rs200569884
|
- |
- |
|
rs200908381
|
- |
- |
|
rs200965026
|
- |
- |
|
rs201296209
|
- |
- |
|
rs202093592
|
- |
- |
|
rs2296681
|
- |
- |
|
rs28371686
|
Polymorphism |
- |
|
rs370245703
|
- |
- |
|
rs375253960
|
- |
- |
|
rs4986893
|
- |
- |
|
rs543931018
|
- |
- |
|
rs545752791
|
- |
- |
|
rs556081405
|
- |
- |
|
rs56165452
|
Polymorphism |
- |
|
rs566644923
|
- |
- |
|
rs72552267
|
- |
- |
|
rs72558191
|
Pathogenic |
Warfarin response [MedGen:C0750384,OMIM:122700] |
|
rs72558192
|
- |
- |
|
rs74428123
|
- |
- |
|
rs749485571
|
- |
- |
|
rs753270728
|
- |
- |
|
rs763463911
|
- |
- |
|
rs763625282
|
- |
- |
|
rs764272389
|
- |
- |
|
rs765456449
|
- |
- |
|
rs774997677
|
- |
- |
|
rs776908257
|
- |
- |
|
rs776965057
|
- |
- |
|
rs777237591
|
- |
- |
|
rs779634821
|
- |
- |
|
rs781200594
|
- |
- |
|
rs781583846
|
- |
- |
|
rs782266548
|
- |
- |
|
rs782328441
|
- |
- |
|
rs79500998
|
- |
- |
|
rs866346652
|
- |
- |
|
rs886037927
|
Likely pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
|
rs889353794
|
- |
- |
hsa00130
|
Ubiquinone and other terpenoid-quinone biosynthesis
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Tyrosinemia 3 (TYRSN3) [MIM:276710] |
|
rs118203916
|
Pathogenic |
Tyrosinemia type 2 [MedGen:C0268487,OMIM:276600,Orphanet:ORPHA28378] |
|
rs137852865
|
Disease |
Tyrosinemia 3 (TYRSN3) [MIM:276710] |
|
rs149180825
|
- |
- |
|
rs181309650
|
- |
- |
|
rs367674632
|
Pathogenic |
4-Alpha-hydroxyphenylpyruvate hydroxylase deficiency [MedGen:C2931042,OMIM:140350,Orphanet:ORPHA2118]; 4-Hydroxyphenylpyruvate dioxygenase deficiency [MedGen:C0268623,OMIM:276710,Orphanet:ORPHA69723,SNOMED CT:413356003]; 4-Hydroxyphenylpyruvate dioxygenase deficiency [MedGen:C0268623,OMIM:276710,Orphanet:ORPHA69723,SNOMED CT:413356003] |
|
rs761817519
|
Likely pathogenic |
Tyrosinemia type 2 [MedGen:C0268487,OMIM:276600,Orphanet:ORPHA28378] |
|
rs768158086
|
- |
- |
|
rs984792300
|
- |
- |
hsa00140
|
Steroid hormone biosynthesis
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
-
|
Unclassified |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
-
|
Pathogenic |
Glaucoma 3, primary congenital, A [MedGen:C1856439,OMIM:231300] |
|
-
|
Disease |
46,XY sex reversal 8 (SRXY8) [MIM:614279] |
|
-
|
Pathogenic |
46,XY sex reversal 8 [Gene:6994,MedGen:C1839840,OMIM:614279,Orphanet:ORPHA443087] |
|
rs1013330593
|
- |
- |
|
rs104893628
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs104894061
|
Pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs104894062
|
Pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs104894066
|
Pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs104894068
|
Pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs104894135
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs104894136
|
Pathogenic |
Breast cancer, susceptibility to [MedGen:C3469522]; Combined partial 17-alpha-hydroxylase/17,20-lyase deficiency [MedGen:C3277851]; Deficiency of steroid 17-alpha-monooxygenase [MedGen:C0268285,OMIM:202110,SNOMED CT:124220008]; not provided [MedGen:CN517202] |
|
rs104894138
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs104894139
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs104894140
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs104894142
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs104894146
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs104894147
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs104894149
|
- |
- |
|
rs104894149
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs104894150
|
- |
- |
|
rs104894153
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs1060499582
|
Pathogenic |
Deficiency of steroid 17-alpha-monooxygenase [MedGen:C0268285,OMIM:202110,SNOMED CT:124220008] |
|
rs11569705
|
Polymorphism |
- |
|
rs1200476864
|
- |
- |
|
rs1202368985
|
- |
- |
|
rs121434534
|
Disease |
Aromatase deficiency (AROD) [MIM:613546] |
|
rs121434536
|
Disease |
Aromatase deficiency (AROD) [MIM:613546] |
|
rs121912978
|
Disease |
Corticosterone methyloxidase 2 deficiency (CMO-2 deficiency) [MIM:610600] |
|
rs1245981952
|
- |
- |
|
rs1257727040
|
- |
- |
|
rs12721627
|
Polymorphism |
- |
|
rs12721629
|
Polymorphism |
- |
|
rs1280898306
|
- |
- |
|
rs1281169684
|
- |
- |
|
rs1309748501
|
- |
- |
|
rs13306279
|
- |
- |
|
rs137853096
|
Pathogenic/Likely pathogenic |
Bifunctional peroxisomal enzyme deficiency [MedGen:C0342870,OMIM:261515,Orphanet:ORPHA300,SNOMED CT:238068007]; Bifunctional peroxisomal enzyme deficiency [MedGen:C0342870,OMIM:261515,Orphanet:ORPHA300,SNOMED CT:238068007]; Perrault syndrome [MedGen:C0685838,Orphanet:ORPHA2855,SNOMED CT:93466004]; not provided [MedGen:CN517202] |
|
rs137853165
|
Disease |
Ichthyosis, X-linked (IXL) [MIM:308100] |
|
rs137853166
|
Disease |
Ichthyosis, X-linked (IXL) [MIM:308100] |
|
rs137853167
|
Disease |
Ichthyosis, X-linked (IXL) [MIM:308100] |
|
rs137853168
|
Disease |
Ichthyosis, X-linked (IXL) [MIM:308100] |
|
rs138105638
|
- |
- |
|
rs139250712
|
- |
- |
|
rs1392720513
|
- |
- |
|
rs1405313151
|
- |
- |
|
rs1423560123
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs142529153
|
- |
- |
|
rs1430256295
|
- |
- |
|
rs144457204
|
- |
- |
|
rs145669559
|
- |
- |
|
rs146655862
|
- |
- |
|
rs1477251308
|
- |
- |
|
rs148542782
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs149081683
|
- |
- |
|
rs1554652998
|
Pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007]; not provided [MedGen:CN517202] |
|
rs1554652999
|
Pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs1554653675
|
Likely pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs17134592
|
- |
- |
|
rs182820353
|
- |
- |
|
rs190776413
|
- |
- |
|
rs199558694
|
- |
- |
|
rs199710929
|
- |
- |
|
rs200004457
|
- |
- |
|
rs200730776
|
- |
- |
|
rs200908381
|
- |
- |
|
rs201286895
|
- |
- |
|
rs201526062
|
- |
- |
|
rs201848142
|
- |
- |
|
rs267606755
|
Likely pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs28371759
|
Polymorphism |
- |
|
rs28383477
|
- |
- |
|
rs2854482
|
Polymorphism |
- |
|
rs28934586
|
Likely pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs28936701
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs3208363
|
Polymorphism |
- |
|
rs367634557
|
Likely pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs370245703
|
- |
- |
|
rs370433029
|
- |
- |
|
rs373611092
|
- |
- |
|
rs374926260
|
- |
- |
|
rs387906751
|
Pathogenic |
46,XY sex reversal 8 [Gene:6994,MedGen:C1839840,OMIM:614279,Orphanet:ORPHA443087] |
|
rs387907572
|
Likely pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs4539
|
Polymorphism |
- |
|
rs4986871
|
Polymorphism |
- |
|
rs4986910
|
Polymorphism |
- |
|
rs4987161
|
Polymorphism |
- |
|
rs5312
|
Polymorphism |
- |
|
rs5317
|
Polymorphism |
- |
|
rs551933154
|
- |
- |
|
rs55785340
|
Polymorphism |
- |
|
rs557905773
|
- |
- |
|
rs55901263
|
- |
- |
|
rs55951658
|
Polymorphism |
- |
|
rs55989760
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs56010818
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs56324128
|
Polymorphism |
- |
|
rs57865060
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs61751139
|
- |
- |
|
rs61751148
|
- |
- |
|
rs61754278
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs62529832
|
- |
- |
|
rs66583685
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs67784355
|
Polymorphism |
- |
|
rs72549378
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs72552799
|
Polymorphism |
- |
|
rs749485571
|
- |
- |
|
rs749574339
|
- |
- |
|
rs750090886
|
- |
- |
|
rs752456881
|
Polymorphism |
- |
|
rs756271054
|
- |
- |
|
rs759183694
|
- |
- |
|
rs760695410
|
- |
- |
|
rs760695410
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs760880418
|
Likely pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs762631156
|
Polymorphism |
- |
|
rs764598023
|
Likely pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs765148467
|
- |
- |
|
rs766107094
|
- |
- |
|
rs768550964
|
- |
- |
|
rs772780687
|
- |
- |
|
rs777638364
|
Disease |
Adrenal hyperplasia 5 (AH5) [MIM:202110] |
|
rs777678299
|
- |
- |
|
rs779103938
|
Pathogenic/Likely pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007]; not provided [MedGen:CN517202] |
|
rs779490029
|
- |
- |
|
rs779989195
|
- |
- |
|
rs780039093
|
- |
- |
|
rs781200594
|
- |
- |
|
rs782266548
|
- |
- |
|
rs782328441
|
- |
- |
|
rs782421321
|
- |
- |
|
rs782769364
|
- |
- |
|
rs78310315
|
Disease |
Aromatase deficiency (AROD) [MIM:613546] |
|
rs80133417
|
- |
- |
|
rs866430018
|
Pathogenic |
Deficiency of steroid 11-beta-monooxygenase [MedGen:C0268292,OMIM:202010,Orphanet:ORPHA90795,SNOMED CT:124214007] |
|
rs886041121
|
Likely pathogenic |
Adrenal insufficiency, congenital, with 46,XY sex reversal, partial or complete [MedGen:C3151055,OMIM:613743,Orphanet:ORPHA168558] |
|
rs887438250
|
- |
- |
|
rs894320518
|
- |
- |
|
rs9282670
|
Polymorphism |
- |
|
rs9341250
|
Polymorphism |
- |
|
rs943974332
|
- |
- |
hsa00220
|
Arginine biosynthesis
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Argininemia (ARGIN) [MIM:207800] |
|
-
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
-
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1048119191
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs104893943
|
Disease |
Argininemia (ARGIN) [MIM:207800] |
|
rs104893947
|
Pathogenic |
Arginase deficiency [MedGen:C0268548,OMIM:207800,Orphanet:ORPHA90,SNOMED CT:23501004]; not provided [MedGen:CN517202] |
|
rs115014558
|
Polymorphism |
- |
|
rs1176072053
|
- |
- |
|
rs1202306773
|
- |
- |
|
rs1202306773
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs121908521
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs121908528
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs121908529
|
Pathogenic/Likely pathogenic |
Primary hyperoxaluria [MedGen:C0020501,Orphanet:ORPHA416,SNOMED CT:17901006]; Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001]; not provided [MedGen:CN517202] |
|
rs121908638
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs121908645
|
Likely pathogenic |
Citrullinemia type I [MedGen:C0175683,OMIM:215700,Orphanet:ORPHA187] |
|
rs121909732
|
Pathogenic |
Hyperinsulinism-hyperammonemia syndrome [MedGen:C1847555,OMIM:606762,Orphanet:ORPHA35878] |
|
rs121909733
|
Pathogenic |
Hyperinsulinism-hyperammonemia syndrome [MedGen:C1847555,OMIM:606762,Orphanet:ORPHA35878] |
|
rs121909734
|
Pathogenic |
Hyperinsulinism-hyperammonemia syndrome [MedGen:C1847555,OMIM:606762,Orphanet:ORPHA35878] |
|
rs121912592
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs121912596
|
- |
- |
|
rs121912596
|
Pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs1242028775
|
- |
- |
|
rs1242028775
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1275599086
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1280211937
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1319489001
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs13408961
|
Polymorphism |
- |
|
rs1345105436
|
- |
- |
|
rs1373919219
|
- |
- |
|
rs1392559810
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1392934477
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs140992177
|
Polymorphism |
- |
|
rs1414143303
|
Pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs146525143
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs149518280
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1553512642
|
Likely pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs1553513429
|
Likely pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs1553518389
|
Pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs180177155
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177156
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177157
|
- |
- |
|
rs180177157
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177161
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177162
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177163
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177173
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177182
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177186
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177191
|
- |
- |
|
rs180177191
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177195
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177197
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177198
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177199
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177202
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177203
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177208
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177210
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177211
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177214
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177217
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177225
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177243
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177244
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177250
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177259
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177264
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177269
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177272
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177277
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177279
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177284
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177287
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177288
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177290
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177292
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177303
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs201023253
|
- |
- |
|
rs201071897
|
- |
- |
|
rs201623252
|
Polymorphism |
- |
|
rs201623252
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs202107577
|
Likely pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs202108064
|
- |
- |
|
rs34664134
|
- |
- |
|
rs34885252
|
Polymorphism |
- |
|
rs369061090
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs371265106
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs372399525
|
- |
- |
|
rs4426527
|
Polymorphism |
- |
|
rs552474817
|
- |
- |
|
rs61729604
|
- |
- |
|
rs66550389
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs66626662
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs66642398
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs66867430
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs67156896
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs67468335
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs67501347
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs67870244
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs67960011
|
Pathogenic |
Ornithine carbamoyltransferase deficiency [MedGen:C0268542,OMIM:311250,Orphanet:ORPHA664,SNOMED CT:80908008]; not provided [MedGen:CN517202] |
|
rs67993095
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs68026851
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72554331
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72554332
|
Pathogenic |
Ornithine carbamoyltransferase deficiency [MedGen:C0268542,OMIM:311250,Orphanet:ORPHA664,SNOMED CT:80908008]; not provided [MedGen:CN517202] |
|
rs72554339
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72554342
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72554344
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72556276
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72556300
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558404
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558407
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558442
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558443
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558444
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558448
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558449
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558450
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558463
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558464
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558465
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs72558478
|
Disease |
Ornithine carbamoyltransferase deficiency (OTCD) [MIM:311250] |
|
rs73106685
|
Polymorphism |
- |
|
rs74205173
|
- |
- |
|
rs749093544
|
- |
- |
|
rs749568989
|
- |
- |
|
rs750670270
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs750905647
|
- |
- |
|
rs752339705
|
- |
- |
|
rs752339705
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs756337473
|
- |
- |
|
rs756437332
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs757205958
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs759201450
|
Pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs759836341
|
- |
- |
|
rs762387914
|
- |
- |
|
rs762387914
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs763887405
|
- |
- |
|
rs765196603
|
- |
- |
|
rs765910470
|
- |
- |
|
rs768215008
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs769018733
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs769085115
|
- |
- |
|
rs770944877
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs771385956
|
- |
- |
|
rs771794639
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs775163147
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs775305020
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs777233486
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs777828000
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs779013628
|
- |
- |
|
rs779259590
|
- |
- |
|
rs796052057
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052060
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052061
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs796052062
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052063
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052064
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052065
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs797045597
|
Likely pathogenic |
Hyperinsulinism-hyperammonemia syndrome [MedGen:C1847555,OMIM:606762,Orphanet:ORPHA35878] |
|
rs80358214
|
Disease |
Congenital systemic glutamine deficiency (CSGD) [MIM:610015] |
|
rs933813349
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs936192871
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
hsa00230
|
Purine metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Likely pathogenic |
Severe combined immunodeficiency due to ADA deficiency [MedGen:C1863236,OMIM:102700,Orphanet:ORPHA277] |
|
-
|
Disease |
Microcephaly with or without chorioretinopathy, lymphedema, or mental retardation (MCLMR) [MIM:152950] |
|
-
|
Disease |
Costello syndrome (CSTLO) [MIM:218040] |
|
-
|
Disease |
Lesch-Nyhan syndrome (LNS) [MIM:300322] |
|
-
|
Disease |
Gout HPRT-related (GOUT-HPRT) [MIM:300323] |
|
-
|
Disease |
Mental retardation, X-linked 102 (MRX102) [MIM:300958] |
|
-
|
Pathogenic |
Brody myopathy [MedGen:C1832918,OMIM:601003,Orphanet:ORPHA53347] |
|
-
|
Disease |
Neuronopathy, distal hereditary motor, 6 (HMN6) [MIM:604320] |
|
-
|
Pathogenic |
Spinal muscular atrophy, distal, autosomal recessive, 1 [MedGen:C1858517,OMIM:604320,Orphanet:ORPHA98920] |
|
-
|
Disease |
Noonan syndrome 3 (NS3) [MIM:609942] |
|
-
|
Disease |
Retinitis pigmentosa 33 (RP33) [MIM:610359] |
|
-
|
Unclassified |
Spastic paraplegia 45, autosomal recessive (SPG45) [MIM:613162] |
|
-
|
Disease |
Adenine phosphoribosyltransferase deficiency (APRTD) [MIM:614723] |
|
-
|
Disease |
Cardiofaciocutaneous syndrome 2 (CFC2) [MIM:615278] |
|
-
|
Disease |
Mental retardation, autosomal dominant 48 (MRD48) [MIM:617751] |
|
-
|
Disease |
Neurodevelopmental disorder with ataxic gait, absent speech, and decreased cortical white matter (NDAGSCW) [MIM:617807] |
|
rs1000661676
|
- |
- |
|
rs1007813910
|
- |
- |
|
rs1035500320
|
- |
- |
|
rs1036185928
|
Pathogenic/Likely pathogenic |
Adenylosuccinate lyase deficiency [MedGen:C0268126,OMIM:103050,Orphanet:ORPHA46,SNOMED CT:15285008]; not provided [MedGen:CN517202] |
|
rs1046009538
|
- |
- |
|
rs104893631
|
Disease |
Mitochondrial DNA depletion syndrome 3 (MTDPS3) [MIM:251880] |
|
rs104893632
|
Disease |
Mitochondrial DNA depletion syndrome 3 (MTDPS3) [MIM:251880] |
|
rs104893633
|
Pathogenic |
Mitochondrial DNA-depletion syndrome 3, hepatocerebral [MedGen:C3151513,OMIM:251880,Orphanet:ORPHA279934] |
|
rs104894003
|
Pathogenic/Likely pathogenic |
Baraitser-Winter syndrome 1 [MedGen:CN031204,OMIM:243310]; Inborn genetic diseases [MeSH:D030342,MedGen:C0950123]; Juvenile-onset dystonia [MedGen:C1846331,OMIM:607371,Orphanet:ORPHA79107]; not provided [MedGen:CN517202] |
|
rs104894028
|
Pathogenic |
Uridine 5-prime monophosphate hydrolase deficiency, hemolytic anemia due to [MedGen:C1849507,OMIM:266120,Orphanet:ORPHA35120] |
|
rs104894226
|
Disease |
Costello syndrome (CSTLO) [MIM:218040] |
|
rs104894226
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Chronic lymphocytic leukemia [Human Phenotype Ontology:HP:0005550,MeSH:D015451,MedGen:C0023434,OMIM:151400,Orphanet:ORPHA67038,SNOMED CT:277473004,SNOMED CT:51092000]; Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723]; Squamous cell lung carcinoma [Human Phenotype Ontology:HP:0030359,MedGen:C0149782]; Thymoma [Human Phenotype Ontology:HP:0100522,MeSH:D013945,MedGen:C0040100,Orphanet:ORPHA99867]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667]; not provided [MedGen:CN517202] |
|
rs104894227
|
Disease |
Costello syndrome (CSTLO) [MIM:218040] |
|
rs104894228
|
Disease |
Schimmelpenning-Feuerstein-Mims syndrome (SFM) [MIM:163200] |
|
rs104894228
|
Disease |
Costello syndrome (CSTLO) [MIM:218040] |
|
rs104894228
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Chronic lymphocytic leukemia [Human Phenotype Ontology:HP:0005550,MeSH:D015451,MedGen:C0023434,OMIM:151400,Orphanet:ORPHA67038,SNOMED CT:277473004,SNOMED CT:51092000]; Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Neoplasm [Human Phenotype Ontology:HP:0002664,MeSH:D009369,MedGen:C0027651,SNOMED CT:108369006]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Noonan syndrome [MeSH:D009634,MedGen:C0028326,Orphanet:ORPHA648,SNOMED CT:205824006]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Rasopathy [MedGen:CN166718,Orphanet:ORPHA98733]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723]; Squamous cell lung carcinoma [Human Phenotype Ontology:HP:0030359,MedGen:C0149782]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667]; not provided [MedGen:CN517202] |
|
rs104894228
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Chronic lymphocytic leukemia [Human Phenotype Ontology:HP:0005550,MeSH:D015451,MedGen:C0023434,OMIM:151400,Orphanet:ORPHA67038,SNOMED CT:277473004,SNOMED CT:51092000]; Epidermal nevus [Human Phenotype Ontology:HP:0010816,MedGen:C0334082,OMIM:162900,Orphanet:ORPHA35125,SNOMED CT:25201003]; Epidermal nevus syndrome [MedGen:C0265318,OMIM:163200,SNOMED CT:239112008]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; NEVUS SPILUS, SOMATIC [na]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Nevus sebaceous [Human Phenotype Ontology:HP:0010815,MedGen:C3854181,Orphanet:ORPHA2612]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; SPITZ NEVUS, SOMATIC [na]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723]; Squamous cell lung carcinoma [Human Phenotype Ontology:HP:0030359,MedGen:C0149782]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667] |
|
rs104894229
|
Disease |
Congenital myopathy with excess of muscle spindles (CMEMS) [MIM:218040] |
|
rs104894229
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of prostate [MedGen:C0007112]; Adenocarcinoma of stomach [MedGen:C0278701]; Adenoid cystic carcinoma [MeSH:D003528,MedGen:C0010606]; Carcinoma of esophagus [Human Phenotype Ontology:HP:0011459,MedGen:C0152018,Orphanet:ORPHA70482]; Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Epidermal nevus with urothelial cancer, somatic [MedGen:C3277679]; Glioblastoma [MeSH:D005909,MedGen:C0017636,Orphanet:ORPHA360,SNOMED CT:63634009]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Myopathy, congenital, with excess of muscle spindles [MedGen:C1968782]; Nasopharyngeal Neoplasms [MeSH:D009303,MedGen:C0027439]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Nevus sebaceous [Human Phenotype Ontology:HP:0010815,MedGen:C3854181,Orphanet:ORPHA2612]; Nevus, woolly hair [MedGen:C0343114,Orphanet:ORPHA79414]; Ovarian Serous Cystadenocarcinoma [MedGen:C0279663]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Papillary renal cell carcinoma, sporadic [MeSH:C538614,MedGen:C1336078]; Rasopathy [MedGen:CN166718,Orphanet:ORPHA98733]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; Uterine Carcinosarcoma [MedGen:C0280630]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667]; not provided [MedGen:CN517202]; not specified [MedGen:CN169374] |
|
rs104894229
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of prostate [MedGen:C0007112]; Adenocarcinoma of stomach [MedGen:C0278701]; Adenoid cystic carcinoma [MeSH:D003528,MedGen:C0010606]; Bladder carcinoma [Human Phenotype Ontology:HP:0002862,MedGen:C0699885]; Carcinoma of esophagus [Human Phenotype Ontology:HP:0011459,MedGen:C0152018,Orphanet:ORPHA70482]; Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Epidermal nevus [Human Phenotype Ontology:HP:0010816,MedGen:C0334082,OMIM:162900,Orphanet:ORPHA35125,SNOMED CT:25201003]; Glioblastoma [MeSH:D005909,MedGen:C0017636,Orphanet:ORPHA360,SNOMED CT:63634009]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Nasopharyngeal Neoplasms [MeSH:D009303,MedGen:C0027439]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Nevus sebaceous [Human Phenotype Ontology:HP:0010815,MedGen:C3854181,Orphanet:ORPHA2612]; Ovarian Serous Cystadenocarcinoma [MedGen:C0279663]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Papillary renal cell carcinoma, sporadic [MeSH:C538614,MedGen:C1336078]; Rasopathy [MedGen:CN166718,Orphanet:ORPHA98733]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; Uterine Carcinosarcoma [MedGen:C0280630]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667]; not provided [MedGen:CN517202] |
|
rs104894230
|
Unclassified |
Bladder carcinoma |
|
rs104894230
|
Pathogenic |
Bladder cancer, somatic [MedGen:C0005684,OMIM:109800,Orphanet:ORPHA157980,SNOMED CT:399326009]; Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Epidermal nevus [Human Phenotype Ontology:HP:0010816,MedGen:C0334082,OMIM:162900,Orphanet:ORPHA35125,SNOMED CT:25201003]; Myopathy, congenital, with excess of muscle spindles [MedGen:C1968782]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; not provided [MedGen:CN517202] |
|
rs104894230
|
Disease |
Costello syndrome (CSTLO) [MIM:218040] |
|
rs104894230
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of prostate [MedGen:C0007112]; Adenocarcinoma of stomach [MedGen:C0278701]; Adenoid cystic carcinoma [MeSH:D003528,MedGen:C0010606]; Carcinoma of esophagus [Human Phenotype Ontology:HP:0011459,MedGen:C0152018,Orphanet:ORPHA70482]; Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Glioblastoma [MeSH:D005909,MedGen:C0017636,Orphanet:ORPHA360,SNOMED CT:63634009]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Inborn genetic diseases [MeSH:D030342,MedGen:C0950123]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Nasopharyngeal Neoplasms [MeSH:D009303,MedGen:C0027439]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Ovarian Serous Cystadenocarcinoma [MedGen:C0279663]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Papillary renal cell carcinoma, sporadic [MeSH:C538614,MedGen:C1336078]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; Uterine Carcinosarcoma [MedGen:C0280630]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667]; not provided [MedGen:CN517202] |
|
rs104894231
|
Disease |
Costello syndrome (CSTLO) [MIM:218040] |
|
rs104894231
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667] |
|
rs104894359
|
Disease |
Noonan syndrome 3 (NS3) [MIM:609942] |
|
rs104894359
|
Disease |
Cardiofaciocutaneous syndrome 2 (CFC2) [MIM:615278] |
|
rs104894364
|
Disease |
Noonan syndrome 3 (NS3) [MIM:609942] |
|
rs104894365
|
Pathogenic |
Endometrial carcinoma [Human Phenotype Ontology:HP:0012114,MedGen:C0476089,OMIM:608089,SNOMED CT:254878006]; Noonan syndrome [MeSH:D009634,MedGen:C0028326,Orphanet:ORPHA648,SNOMED CT:205824006]; Noonan syndrome 3 [MedGen:C1860991,OMIM:609942]; Rasopathy [MedGen:CN166718,Orphanet:ORPHA98733]; not provided [MedGen:CN517202] |
|
rs104894365
|
Disease |
Noonan syndrome 3 (NS3) [MIM:609942] |
|
rs104894366
|
Disease |
Noonan syndrome 3 (NS3) [MIM:609942] |
|
rs104894366
|
Disease |
Cardiofaciocutaneous syndrome 2 (CFC2) [MIM:615278] |
|
rs104894367
|
Pathogenic |
Noonan syndrome 3 [MedGen:C1860991,OMIM:609942] |
|
rs104894451
|
Disease |
Purine nucleoside phosphorylase deficiency (PNPD) [MIM:613179] |
|
rs104894452
|
Disease |
Purine nucleoside phosphorylase deficiency (PNPD) [MIM:613179] |
|
rs104894506
|
Disease |
Adenine phosphoribosyltransferase deficiency (APRTD) [MIM:614723] |
|
rs104894508
|
Disease |
Adenine phosphoribosyltransferase deficiency (APRTD) [MIM:614723] |
|
rs1057519430
|
Disease |
Mental retardation, X-linked 102 (MRX102) [MIM:300958] |
|
rs1057519742
|
Pathogenic/Likely pathogenic |
Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Intraocular melanoma [Human Phenotype Ontology:HP:0007716,MeSH:C536494,MedGen:C0220633,OMIM:155720] |
|
rs1057519874
|
Likely pathogenic |
Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723] |
|
rs1057519948
|
Likely pathogenic |
Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723] |
|
rs1057519951
|
Likely pathogenic |
Adenocarcinoma of stomach [MedGen:C0278701]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037] |
|
rs1064794287
|
Pathogenic |
Nemaline myopathy 3 [MedGen:C3711389,OMIM:161800,Orphanet:ORPHA98904] |
|
rs1064794574
|
Disease |
Mental retardation, X-linked 102 (MRX102) [MIM:300958] |
|
rs1064794680
|
- |
- |
|
rs112445441
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Breast adenocarcinoma [MedGen:C0858252,Orphanet:ORPHA213528]; Juvenile myelomonocytic leukemia [Human Phenotype Ontology:HP:0012209,MedGen:C0349639,OMIM:607785,Orphanet:ORPHA86834]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; Ovarian Neoplasms [MeSH:D010051,MedGen:CN236629]; RAS-associated autoimmune leukoproliferative disorder [MedGen:C2674723,OMIM:614470,Orphanet:ORPHA268114] |
|
rs112445441
|
Disease |
Leukemia, juvenile myelomonocytic (JMML) [MIM:607785] |
|
rs1135401758
|
Likely pathogenic |
Polymicrogyria, asymmetric [MedGen:C3552236,OMIM:610031]; not provided [MedGen:CN517202] |
|
rs1135401776
|
Pathogenic |
Noonan syndrome 3 [MedGen:C1860991,OMIM:609942] |
|
rs114636410
|
- |
- |
|
rs11549976
|
Polymorphism |
- |
|
rs11554273
|
Pathogenic/Likely pathogenic |
Adenocarcinoma of stomach [MedGen:C0278701]; Adrenocortical carcinoma [Human Phenotype Ontology:HP:0006744,MeSH:D018268,MedGen:C0206686,Orphanet:ORPHA1501]; Cushing's syndrome [MedGen:C1857451,OMIM:219080]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; McCune-Albright syndrome [MedGen:C0242292,OMIM:174800,Orphanet:ORPHA562]; Neoplasm [Human Phenotype Ontology:HP:0002664,MeSH:D009369,MedGen:C0027651,SNOMED CT:108369006]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; PITUITARY ADENOMA 3, MULTIPLE TYPES [MedGen:C4540135,OMIM:617686]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Sex cord-stromal tumor [MedGen:C0206724]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667] |
|
rs11554290
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Adrenocortical carcinoma [Human Phenotype Ontology:HP:0006744,MeSH:D018268,MedGen:C0206686,Orphanet:ORPHA1501]; Chronic lymphocytic leukemia [Human Phenotype Ontology:HP:0005550,MeSH:D015451,MedGen:C0023434,OMIM:151400,Orphanet:ORPHA67038,SNOMED CT:277473004,SNOMED CT:51092000]; Congenital giant melanocytic nevus [Human Phenotype Ontology:HP:0005600,MedGen:C1842036,OMIM:137550,Orphanet:ORPHA626]; Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Epidermal nevus [Human Phenotype Ontology:HP:0010816,MedGen:C0334082,OMIM:162900,Orphanet:ORPHA35125,SNOMED CT:25201003]; Epidermal nevus syndrome [MedGen:C0265318,OMIM:163200,SNOMED CT:239112008]; Follicular thyroid carcinoma [Human Phenotype Ontology:HP:0006731,MedGen:C4225426,OMIM:188470]; Glioblastoma [MeSH:D005909,MedGen:C0017636,Orphanet:ORPHA360,SNOMED CT:63634009]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Nasopharyngeal Neoplasms [MeSH:D009303,MedGen:C0027439]; Neoplasm of brain [Human Phenotype Ontology:HP:0030692,MeSH:D001932,MedGen:C0006118,SNOMED CT:126952004]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neurocutaneous melanosis [MedGen:C0544862,OMIM:249400,Orphanet:ORPHA2481]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; Ovarian Serous Cystadenocarcinoma [MedGen:C0279663]; Renal cell carcinoma, papillary, 1 [Human Phenotype Ontology:HP:0005584,MeSH:D002292,MedGen:C0007134,OMIM:605074,Orphanet:ORPHA217071,SNOMED CT:41607009]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; not provided [MedGen:CN517202] |
|
rs1158027383
|
- |
- |
|
rs1167433865
|
- |
- |
|
rs1177201180
|
Disease |
Cystic fibrosis (CF) [MIM:219700] |
|
rs1184952683
|
- |
- |
|
rs1204316787
|
Pathogenic |
Mitochondrial DNA-depletion syndrome 3, hepatocerebral [MedGen:C3151513,OMIM:251880,Orphanet:ORPHA279934] |
|
rs121434478
|
Pathogenic |
AICAR transformylase/IMP cyclohydrolase deficiency [MedGen:C1837530,OMIM:608688,Orphanet:ORPHA250977] |
|
rs121434595
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Carcinoma of colon [MedGen:C0699790,OMIM:114500,SNOMED CT:269533000]; Congenital giant melanocytic nevus [Human Phenotype Ontology:HP:0005600,MedGen:C1842036,OMIM:137550,Orphanet:ORPHA626]; Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Medulloblastoma [Human Phenotype Ontology:HP:0002885,MeSH:D008527,MedGen:C0025149,OMIM:155255,Orphanet:ORPHA616]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Non-Hodgkin lymphoma [Human Phenotype Ontology:HP:0012539,MedGen:C0024305,OMIM:605027,Orphanet:ORPHA547,SNOMED CT:1929004]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680] |
|
rs121434595
|
Likely pathogenic |
Neoplasm of stomach [Human Phenotype Ontology:HP:0006753,MeSH:D013274,MedGen:C0038356,OMIM:613659,SNOMED CT:126824007] |
|
rs121434596
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Juvenile myelomonocytic leukemia [Human Phenotype Ontology:HP:0012209,MedGen:C0349639,OMIM:607785,Orphanet:ORPHA86834]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Medulloblastoma [Human Phenotype Ontology:HP:0002885,MeSH:D008527,MedGen:C0025149,OMIM:155255,Orphanet:ORPHA616]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Non-Hodgkin lymphoma [Human Phenotype Ontology:HP:0012539,MedGen:C0024305,OMIM:605027,Orphanet:ORPHA547,SNOMED CT:1929004]; Noonan syndrome 6 [MedGen:C2750732,OMIM:613224]; RAS-associated autoimmune leukoproliferative disorder [MedGen:C2674723,OMIM:614470,Orphanet:ORPHA268114]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; not provided [MedGen:CN517202] |
|
rs121908714
|
Disease |
Severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell-negative/NK-cell-negative due to adenosine deaminase deficiency (ADASCID) [MIM:102700] |
|
rs121908717
|
Disease |
Severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell-negative/NK-cell-negative due to adenosine deaminase deficiency (ADASCID) [MIM:102700] |
|
rs121908724
|
Disease |
Severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell-negative/NK-cell-negative due to adenosine deaminase deficiency (ADASCID) [MIM:102700] |
|
rs121908725
|
Disease |
Severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell-negative/NK-cell-negative due to adenosine deaminase deficiency (ADASCID) [MIM:102700] |
|
rs121908759
|
Pathogenic/Likely pathogenic |
Cystic fibrosis [MedGen:C0010674,OMIM:219700,Orphanet:ORPHA586,SNOMED CT:190905008]; Hereditary pancreatitis [MedGen:C0238339,OMIM:167800,Orphanet:ORPHA676,SNOMED CT:68072000]; not provided [MedGen:CN517202] |
|
rs121908759
|
Unclassified |
Congenital bilateral absence of the vas deferens (CBAVD) [MIM:277180] |
|
rs121908805
|
Pathogenic |
Cystic fibrosis [MedGen:C0010674,OMIM:219700,Orphanet:ORPHA586,SNOMED CT:190905008]; not provided [MedGen:CN517202] |
|
rs121908951
|
Disease |
Brachyolmia type 4 with mild epiphyseal and metaphyseal changes (BCYM4) [MIM:612847] |
|
rs121909009
|
Disease |
Cystic fibrosis (CF) [MIM:219700] |
|
rs121909033
|
Disease |
Cystic fibrosis (CF) [MIM:219700] |
|
rs121912734
|
Pathogenic |
Keratosis follicularis [MedGen:C0022595,OMIM:124200,Orphanet:ORPHA218,SNOMED CT:48611009] |
|
rs121913233
|
Likely pathogenic |
Epidermal nevus syndrome [MedGen:C0265318,OMIM:163200,SNOMED CT:239112008]; Neoplasm [Human Phenotype Ontology:HP:0002664,MeSH:D009369,MedGen:C0027651,SNOMED CT:108369006]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Vascular Tumors Including Pyogenic Granuloma [na]; not provided [MedGen:CN517202] |
|
rs121913233
|
Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of prostate [MedGen:C0007112]; Adenocarcinoma of stomach [MedGen:C0278701]; Chronic lymphocytic leukemia [Human Phenotype Ontology:HP:0005550,MeSH:D015451,MedGen:C0023434,OMIM:151400,Orphanet:ORPHA67038,SNOMED CT:277473004,SNOMED CT:51092000]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723]; Squamous cell lung carcinoma [Human Phenotype Ontology:HP:0030359,MedGen:C0149782]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680] |
|
rs121913237
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Epidermal nevus [Human Phenotype Ontology:HP:0010816,MedGen:C0334082,OMIM:162900,Orphanet:ORPHA35125,SNOMED CT:25201003]; Juvenile myelomonocytic leukemia [Human Phenotype Ontology:HP:0012209,MedGen:C0349639,OMIM:607785,Orphanet:ORPHA86834]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; not provided [MedGen:CN517202] |
|
rs121913240
|
Unclassified |
A colorectal cancer sample |
|
rs121913250
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; not provided [MedGen:CN517202] |
|
rs121913250
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Chronic myelogenous leukemia [Human Phenotype Ontology:HP:0005506,MeSH:D015464,MedGen:C0023473,OMIM:608232,Orphanet:ORPHA521]; Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Myelodysplastic syndrome [MeSH:D009190,MedGen:C3463824,OMIM:614286,Orphanet:ORPHA52688]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; not provided [MedGen:CN517202] |
|
rs121913255
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Adrenocortical carcinoma [Human Phenotype Ontology:HP:0006744,MeSH:D018268,MedGen:C0206686,Orphanet:ORPHA1501]; Chronic lymphocytic leukemia [Human Phenotype Ontology:HP:0005550,MeSH:D015451,MedGen:C0023434,OMIM:151400,Orphanet:ORPHA67038,SNOMED CT:277473004,SNOMED CT:51092000]; Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Glioblastoma [MeSH:D005909,MedGen:C0017636,Orphanet:ORPHA360,SNOMED CT:63634009]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Nasopharyngeal Neoplasms [MeSH:D009303,MedGen:C0027439]; Neoplasm of brain [Human Phenotype Ontology:HP:0030692,MeSH:D001932,MedGen:C0006118,SNOMED CT:126952004]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Ovarian Serous Cystadenocarcinoma [MedGen:C0279663]; Renal cell carcinoma, papillary, 1 [Human Phenotype Ontology:HP:0005584,MeSH:D002292,MedGen:C0007134,OMIM:605074,Orphanet:ORPHA217071,SNOMED CT:41607009]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680]; not provided [MedGen:CN517202] |
|
rs121913492
|
Pathogenic/Likely pathogenic |
Cutaneous melanoma [Human Phenotype Ontology:HP:0012056,MeSH:D008545,MedGen:C0025202]; Intraocular melanoma [Human Phenotype Ontology:HP:0007716,MeSH:C536494,MedGen:C0220633,OMIM:155720] |
|
rs121913494
|
Pathogenic |
McCune-Albright syndrome [MedGen:C0242292,OMIM:174800,Orphanet:ORPHA562]; PITUITARY ADENOMA 3, MULTIPLE TYPES [MedGen:C4540135,OMIM:617686] |
|
rs121913495
|
Pathogenic/Likely pathogenic |
Adenocarcinoma of stomach [MedGen:C0278701]; Adrenocortical carcinoma [Human Phenotype Ontology:HP:0006744,MeSH:D018268,MedGen:C0206686,Orphanet:ORPHA1501]; Cushing's syndrome [MedGen:C1857451,OMIM:219080]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; McCune-Albright syndrome [MedGen:C0242292,OMIM:174800,Orphanet:ORPHA562]; Neoplasm [Human Phenotype Ontology:HP:0002664,MeSH:D009369,MedGen:C0027651,SNOMED CT:108369006]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; PITUITARY ADENOMA 3, MULTIPLE TYPES [MedGen:C4540135,OMIM:617686]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Sex cord-stromal tumor [MedGen:C0206724]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667] |
|
rs121913496
|
Likely pathogenic |
Adenocarcinoma of prostate [MedGen:C0007112]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Neoplasm [Human Phenotype Ontology:HP:0002664,MeSH:D009369,MedGen:C0027651,SNOMED CT:108369006]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Noonan syndrome 3 [MedGen:C1860991,OMIM:609942]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037]; Squamous cell carcinoma of the skin [Human Phenotype Ontology:HP:0006739,MedGen:C0553723]; Squamous cell lung carcinoma [Human Phenotype Ontology:HP:0030359,MedGen:C0149782]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680] |
|
rs121913527
|
Unclassified |
A colorectal cancer sample |
|
rs121913528
|
Disease |
Gastric cancer (GASC) [MIM:613659] |
|
rs121913529
|
Unclassified |
A colorectal cancer sample |
|
rs121913529
|
Pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Carcinoma of pancreas [MeSH:C562463,MedGen:C0235974,OMIM:260350,Orphanet:ORPHA217074,SNOMED CT:372142002]; Cerebral arteriovenous malformation [Human Phenotype Ontology:HP:0002408,MedGen:C0917804,OMIM:108010,SNOMED CT:234142008]; Epidermal nevus [Human Phenotype Ontology:HP:0010816,MedGen:C0334082,OMIM:162900,Orphanet:ORPHA35125,SNOMED CT:25201003]; Epidermal nevus syndrome [MedGen:C0265318,OMIM:163200,SNOMED CT:239112008]; Juvenile myelomonocytic leukemia [Human Phenotype Ontology:HP:0012209,MedGen:C0349639,OMIM:607785,Orphanet:ORPHA86834]; Lung cancer [MedGen:C0684249,OMIM:211980,SNOMED CT:187875007]; Neoplasm of ovary [Gene:6765,Human Phenotype Ontology:HP:0100615,MedGen:C0919267,OMIM:167000,SNOMED CT:123843001]; Neoplasm of stomach [Human Phenotype Ontology:HP:0006753,MeSH:D013274,MedGen:C0038356,OMIM:613659,SNOMED CT:126824007]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Nevus sebaceous [Human Phenotype Ontology:HP:0010815,MedGen:C3854181,Orphanet:ORPHA2612]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; Ovarian Neoplasms [MeSH:D010051,MedGen:CN236629]; RAS-associated autoimmune leukoproliferative disorder [MedGen:C2674723,OMIM:614470,Orphanet:ORPHA268114]; Rasopathy [MedGen:CN166718,Orphanet:ORPHA98733]; Vascular Tumors Including Pyogenic Granuloma [na]; not provided [MedGen:CN517202] |
|
rs121913529
|
Pathogenic/Likely pathogenic |
Gastrointestinal stroma tumor [Human Phenotype Ontology:HP:0100723,MeSH:D046152,MedGen:C0238198,OMIM:606764,Orphanet:ORPHA44890]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; Ovarian Neoplasms [MeSH:D010051,MedGen:CN236629] |
|
rs121913529
|
Disease |
Leukemia, juvenile myelomonocytic (JMML) [MIM:607785] |
|
rs121913529
|
Disease |
Gastric cancer (GASC) [MIM:613659] |
|
rs121913530
|
Unclassified |
Lung carcinoma |
|
rs121913530
|
Pathogenic |
Adenoid cystic carcinoma [MeSH:D003528,MedGen:C0010606]; Bladder cancer, somatic [MedGen:C0005684,OMIM:109800,Orphanet:ORPHA157980,SNOMED CT:399326009]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; Ovarian Neoplasms [MeSH:D010051,MedGen:CN236629]; Squamous cell lung carcinoma [Human Phenotype Ontology:HP:0030359,MedGen:C0149782] |
|
rs121913530
|
Disease |
Leukemia, juvenile myelomonocytic (JMML) [MIM:607785] |
|
rs121913530
|
Pathogenic |
Juvenile myelomonocytic leukemia [Human Phenotype Ontology:HP:0012209,MedGen:C0349639,OMIM:607785,Orphanet:ORPHA86834]; Neoplasm of ovary [Gene:6765,Human Phenotype Ontology:HP:0100615,MedGen:C0919267,OMIM:167000,SNOMED CT:123843001]; Neoplasm of stomach [Human Phenotype Ontology:HP:0006753,MeSH:D013274,MedGen:C0038356,OMIM:613659,SNOMED CT:126824007]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007] |
|
rs121913530
|
Pathogenic/Likely pathogenic |
Endometrial carcinoma [Human Phenotype Ontology:HP:0012114,MedGen:C0476089,OMIM:608089,SNOMED CT:254878006]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Lung cancer [MedGen:C0684249,OMIM:211980,SNOMED CT:187875007]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; Ovarian Neoplasms [MeSH:D010051,MedGen:CN236629] |
|
rs121913535
|
Polymorphism |
- |
|
rs121913535
|
Pathogenic |
Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; RAS-associated autoimmune leukoproliferative disorder [MedGen:C2674723,OMIM:614470,Orphanet:ORPHA268114]; not provided [MedGen:CN517202] |
|
rs121917757
|
Likely pathogenic |
Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Myopathy, congenital, with excess of muscle spindles [MedGen:C1968782]; not provided [MedGen:CN517202] |
|
rs121917758
|
Disease |
Costello syndrome (CSTLO) [MIM:218040] |
|
rs121917759
|
Disease |
Costello syndrome (CSTLO) [MIM:218040] |
|
rs121917759
|
Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Uterine cervical neoplasms [MeSH:D002583,MedGen:CN236667] |
|
rs121917887
|
Polymorphism |
- |
|
rs121918614
|
Pathogenic |
Familial hemiplegic migraine type 2 [MedGen:C1865322,OMIM:602481] |
|
rs121918620
|
Pathogenic |
Familial hemiplegic migraine type 2 [MedGen:C1865322,OMIM:602481] |
|
rs121964852
|
Pathogenic |
Cap myopathy 1 [MedGen:C3714994]; Congenital myopathy with fiber type disproportion [MedGen:C0546264,OMIM:255310,Orphanet:ORPHA2020,SNOMED CT:240084007]; Congenital myopathy with fiber type disproportion [MedGen:C0546264,OMIM:255310,Orphanet:ORPHA2020,SNOMED CT:240084007]; Nemaline myopathy 1 [MedGen:C1836448,OMIM:609284]; Nemaline myopathy 1 [MedGen:C1836448,OMIM:609284]; not provided [MedGen:CN517202] |
|
rs121964854
|
Pathogenic/Likely pathogenic |
Congenital myopathy with fiber type disproportion [MedGen:C0546264,OMIM:255310,Orphanet:ORPHA2020,SNOMED CT:240084007]; Nemaline myopathy 1 [MedGen:C1836448,OMIM:609284]; not provided [MedGen:CN517202] |
|
rs1221315322
|
- |
- |
|
rs1244531323
|
- |
- |
|
rs1247270735
|
- |
- |
|
rs1248393347
|
- |
- |
|
rs1267519974
|
Likely pathogenic |
Mental retardation, X-linked 102 [MedGen:C4085582,OMIM:300958,Orphanet:ORPHA457260] |
|
rs1283442932
|
- |
- |
|
rs1297642271
|
- |
- |
|
rs1298336881
|
- |
- |
|
rs1300241521
|
- |
- |
|
rs1323796901
|
- |
- |
|
rs1329985221
|
- |
- |
|
rs1339474843
|
- |
- |
|
rs1340227061
|
- |
- |
|
rs1343080275
|
- |
- |
|
rs1356115868
|
- |
- |
|
rs1364564756
|
- |
- |
|
rs1372608166
|
- |
- |
|
rs1376129073
|
- |
- |
|
rs137852485
|
Disease |
Gout HPRT-related (GOUT-HPRT) [MIM:300323] |
|
rs137852487
|
Disease |
Lesch-Nyhan syndrome (LNS) [MIM:300322] |
|
rs137852488
|
Disease |
Lesch-Nyhan syndrome (LNS) [MIM:300322] |
|
rs137852489
|
Pathogenic |
Lesch-Nyhan syndrome [MedGen:C0023374,OMIM:300322,Orphanet:ORPHA510,SNOMED CT:10406007]; Lesch-Nyhan syndrome [MedGen:C0023374,OMIM:300322,Orphanet:ORPHA510,SNOMED CT:10406007]; Partial hypoxanthine-guanine phosphoribosyltransferase deficiency [MedGen:C0268117,OMIM:300323,Orphanet:ORPHA79233,SNOMED CT:238007004] |
|
rs137852496
|
Disease |
Lesch-Nyhan syndrome (LNS) [MIM:300322] |
|
rs137852497
|
Pathogenic |
Lesch-Nyhan syndrome [MedGen:C0023374,OMIM:300322,Orphanet:ORPHA510,SNOMED CT:10406007] |
|
rs137852498
|
Disease |
Gout HPRT-related (GOUT-HPRT) [MIM:300323] |
|
rs137852503
|
Pathogenic, other |
HPRT TOKYO [na]; Lesch-Nyhan syndrome [MedGen:C0023374,OMIM:300322,Orphanet:ORPHA510,SNOMED CT:10406007] |
|
rs137852504
|
Disease |
Gout HPRT-related (GOUT-HPRT) [MIM:300323] |
|
rs137852543
|
Disease |
Phosphoribosylpyrophosphate synthetase superactivity (PRPS1 superactivity) [MIM:300661] |
|
rs137852545
|
Disease |
Phosphoribosylpyrophosphate synthetase superactivity (PRPS1 superactivity) [MIM:300661] |
|
rs137853194
|
Pathogenic |
Polymicrogyria, asymmetric [MedGen:C3552236,OMIM:610031] |
|
rs137853226
|
Pathogenic |
Pituitary dependent hypercortisolism [MedGen:C0221406,OMIM:219090,SNOMED CT:190502001] |
|
rs137854533
|
Pathogenic |
McCune-Albright syndrome [MedGen:C0242292,OMIM:174800,Orphanet:ORPHA562] |
|
rs137854533
|
Pathogenic |
PITUITARY ADENOMA 3, MULTIPLE TYPES [MedGen:C4540135,OMIM:617686] |
|
rs137915627
|
- |
- |
|
rs138825464
|
- |
- |
|
rs1388698482
|
- |
- |
|
rs139190720
|
- |
- |
|
rs139499540
|
- |
- |
|
rs139573311
|
Pathogenic |
Cystic fibrosis [MedGen:C0010674,OMIM:219700,Orphanet:ORPHA586,SNOMED CT:190905008]; not provided [MedGen:CN517202] |
|
rs139689788
|
- |
- |
|
rs1397449789
|
- |
- |
|
rs1405334512
|
- |
- |
|
rs140928408
|
- |
- |
|
rs1411730717
|
- |
- |
|
rs141437989
|
- |
- |
|
rs141810774
|
- |
- |
|
rs142619172
|
- |
- |
|
rs142839840
|
- |
- |
|
rs1440561057
|
- |
- |
|
rs144181978
|
Disease |
Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 4 (PEOB4) [MIM:617070] |
|
rs145097404
|
- |
- |
|
rs145142862
|
- |
- |
|
rs146045963
|
- |
- |
|
rs146054415
|
- |
- |
|
rs1464427483
|
- |
- |
|
rs1465803265
|
Disease |
Neuronopathy, distal hereditary motor, 6 (HMN6) [MIM:604320] |
|
rs1477361505
|
- |
- |
|
rs149353437
|
- |
- |
|
rs149917863
|
- |
- |
|
rs150181226
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs150262349
|
- |
- |
|
rs151079750
|
Disease |
Neuronopathy, distal hereditary motor, 6 (HMN6) [MIM:604320] |
|
rs1553396458
|
Likely pathogenic |
Visceral myopathy [MedGen:C0042781,OMIM:155310,Orphanet:ORPHA2241] |
|
rs1553500862
|
Pathogenic |
KERATOCONUS 9 [MedGen:C4693660,OMIM:617928] |
|
rs1554126925
|
Likely pathogenic |
Polymicrogyria, asymmetric [MedGen:C3552236,OMIM:610031] |
|
rs1554258695
|
Likely pathogenic |
Dyskinesia, limb and orofacial, infantile-onset [MedGen:C4310792,OMIM:616921] |
|
rs1554263326
|
Pathogenic |
MENTAL RETARDATION, AUTOSOMAL DOMINANT 48 [MedGen:C4540321,OMIM:617751] |
|
rs1554264268
|
Likely pathogenic |
MENTAL RETARDATION, AUTOSOMAL DOMINANT 48 [MedGen:C4540321,OMIM:617751]; not provided [MedGen:CN517202] |
|
rs1554329113
|
Likely pathogenic |
Baraitser-Winter syndrome 1 [MedGen:CN031204,OMIM:243310] |
|
rs1554859966
|
Pathogenic |
Microcephaly with or without chorioretinopathy, lymphedema, or mental retardation [MedGen:C1835265,OMIM:152950,Orphanet:ORPHA2526] |
|
rs1555690779
|
Pathogenic |
NEURODEVELOPMENTAL DISORDER WITH ATAXIC GAIT, ABSENT SPEECH, AND DECREASED CORTICAL WHITE MATTER [MedGen:C4540498,OMIM:617807] |
|
rs1555690804
|
Pathogenic |
NEURODEVELOPMENTAL DISORDER WITH ATAXIC GAIT, ABSENT SPEECH, AND DECREASED CORTICAL WHITE MATTER [MedGen:C4540498,OMIM:617807] |
|
rs1555954105
|
Pathogenic |
Mental retardation, X-linked 102 [MedGen:C4085582,OMIM:300958,Orphanet:ORPHA457260] |
|
rs17851045
|
Unclassified |
Lung carcinoma |
|
rs17851045
|
Pathogenic/Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Chronic lymphocytic leukemia [Human Phenotype Ontology:HP:0005550,MeSH:D015451,MedGen:C0023434,OMIM:151400,Orphanet:ORPHA67038,SNOMED CT:277473004,SNOMED CT:51092000]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Squamous cell lung carcinoma [Human Phenotype Ontology:HP:0030359,MedGen:C0149782]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680] |
|
rs17853396
|
Polymorphism |
- |
|
rs1800089
|
Polymorphism |
- |
|
rs183618664
|
- |
- |
|
rs188888716
|
- |
- |
|
rs193922500
|
Likely pathogenic |
Cystic fibrosis [MedGen:C0010674,OMIM:219700,Orphanet:ORPHA586,SNOMED CT:190905008]; not provided [MedGen:CN517202] |
|
rs199761904
|
- |
- |
|
rs199897325
|
- |
- |
|
rs200010374
|
- |
- |
|
rs200204024
|
- |
- |
|
rs200637968
|
- |
- |
|
rs200790521
|
- |
- |
|
rs200913020
|
- |
- |
|
rs200971951
|
- |
- |
|
rs201354416
|
- |
- |
|
rs201461737
|
- |
- |
|
rs201477144
|
- |
- |
|
rs201823652
|
Pathogenic |
Nemaline myopathy 3 [MedGen:C3711389,OMIM:161800,Orphanet:ORPHA98904] |
|
rs202092105
|
- |
- |
|
rs202097988
|
- |
- |
|
rs2372536
|
- |
- |
|
rs2672150
|
- |
- |
|
rs267606635
|
Unclassified |
Severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell-negative/NK-cell-negative due to adenosine deaminase deficiency (ADASCID) [MIM:102700] |
|
rs267606699
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs267606700
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs267606701
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs267606863
|
Disease |
Lesch-Nyhan syndrome (LNS) [MIM:300322] |
|
rs267606920
|
Pathogenic |
Noonan syndrome 1 [MedGen:C4551602,OMIM:163950]; Noonan syndrome 6 [MedGen:C2750732,OMIM:613224]; not provided [MedGen:CN517202] |
|
rs281875326
|
Pathogenic |
Baraitser-Winter Syndrome 2 [MedGen:C3281235,OMIM:614583]; not provided [MedGen:CN517202] |
|
rs281875331
|
Pathogenic |
Baraitser-Winter syndrome 1 [MedGen:CN031204,OMIM:243310]; not provided [MedGen:CN517202] |
|
rs28933401
|
Pathogenic |
Familial hemiplegic migraine type 2 [MedGen:C1865322,OMIM:602481] |
|
rs28933406
|
Pathogenic/Likely pathogenic |
Follicular thyroid carcinoma [Human Phenotype Ontology:HP:0006731,MedGen:C4225426,OMIM:188470]; Neoplasm of the breast [Human Phenotype Ontology:HP:0100013,MeSH:D001943,MedGen:C1458155,Orphanet:ORPHA180250,SNOMED CT:126926005]; Noonan syndrome 3 [MedGen:C1860991,OMIM:609942]; Spermatocytic seminoma [MedGen:C0334517,Orphanet:ORPHA99865]; not provided [MedGen:CN517202] |
|
rs28933406
|
Likely pathogenic |
Acute myeloid leukemia [Human Phenotype Ontology:HP:0004808,MeSH:D015470,MedGen:C0023467,OMIM:601626,Orphanet:ORPHA519,SNOMED CT:17788007]; Adenocarcinoma of stomach [MedGen:C0278701]; Chronic lymphocytic leukemia [Human Phenotype Ontology:HP:0005550,MeSH:D015451,MedGen:C0023434,OMIM:151400,Orphanet:ORPHA67038,SNOMED CT:277473004,SNOMED CT:51092000]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Lung adenocarcinoma [Human Phenotype Ontology:HP:0030078,MeSH:C538231,MedGen:C0152013]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Malignant neoplasm of body of uterus [MedGen:C0153574,Orphanet:ORPHA213569]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005]; Neoplasm of the thyroid gland [Human Phenotype Ontology:HP:0100031,MeSH:D013964,MedGen:C0040136,Orphanet:ORPHA100087]; Pancreatic adenocarcinoma [Human Phenotype Ontology:HP:0006725,MedGen:C0281361]; Squamous cell lung carcinoma [Human Phenotype Ontology:HP:0030359,MedGen:C0149782]; Transitional cell carcinoma of the bladder [Human Phenotype Ontology:HP:0006740,MedGen:C0279680] |
|
rs28999113
|
- |
- |
|
rs28999113
|
Disease |
Adenine phosphoribosyltransferase deficiency (APRTD) [MIM:614723] |
|
rs34082669
|
Polymorphism |
- |
|
rs34354104
|
Polymorphism |
- |
|
rs35698797
|
Polymorphism |
- |
|
rs367543028
|
Pathogenic |
Bloom syndrome [MedGen:C0005859,OMIM:210900,Orphanet:ORPHA125,SNOMED CT:4434006]; not provided [MedGen:CN517202] |
|
rs367637749
|
- |
- |
|
rs368366043
|
- |
- |
|
rs369010777
|
- |
- |
|
rs369522795
|
- |
- |
|
rs369643556
|
- |
- |
|
rs370539470
|
- |
- |
|
rs371090069
|
- |
- |
|
rs372332465
|
- |
- |
|
rs372401715
|
- |
- |
|
rs372631124
|
Likely pathogenic |
Desbuquois dysplasia 1 [MedGen:C4012146,OMIM:251450]; EPIPHYSEAL DYSPLASIA, MULTIPLE, 7 [MedGen:C4540251,OMIM:617719] |
|
rs373442940
|
- |
- |
|
rs373458753
|
Disease |
Adenylosuccinase deficiency (ADSLD) [MIM:103050] |
|
rs373875697
|
- |
- |
|
rs374259530
|
Pathogenic |
Adenylosuccinate lyase deficiency [MedGen:C0268126,OMIM:103050,Orphanet:ORPHA46,SNOMED CT:15285008]; Difficulty standing [Human Phenotype Ontology:HP:0003698,MedGen:C0241237]; Generalized myoclonic seizures [Human Phenotype Ontology:HP:0002123,MedGen:C4021759]; Inability to walk [Human Phenotype Ontology:HP:0002540,MedGen:C0560046]; Progressive neurologic deterioration [Human Phenotype Ontology:HP:0002344,MedGen:C1854838]; Severe global developmental delay [Human Phenotype Ontology:HP:0011344,MedGen:C1837397]; not provided [MedGen:CN517202] |
|
rs375997993
|
- |
- |
|
rs376698630
|
- |
- |
|
rs376788669
|
- |
- |
|
rs3863907
|
- |
- |
|
rs387906643
|
Disease |
Microcephaly with or without chorioretinopathy, lymphedema, or mental retardation (MCLMR) [MIM:152950] |
|
rs387907178
|
Pathogenic |
Auriculocondylar syndrome 1 [MedGen:C4551996,OMIM:602483] |
|
rs387907206
|
Disease |
Cardiofaciocutaneous syndrome 2 (CFC2) [MIM:615278] |
|
rs397508174
|
Pathogenic |
Cystic fibrosis [MedGen:C0010674,OMIM:219700,Orphanet:ORPHA586,SNOMED CT:190905008] |
|
rs397508175
|
Pathogenic |
Cystic fibrosis [MedGen:C0010674,OMIM:219700,Orphanet:ORPHA586,SNOMED CT:190905008] |
|
rs397508195
|
Disease |
Cystic fibrosis (CF) [MIM:219700] |
|
rs397508282
|
Disease |
Cystic fibrosis (CF) [MIM:219700] |
|
rs397508288
|
Disease |
Cystic fibrosis (CF) [MIM:219700] |
|
rs397508313
|
Disease |
Cystic fibrosis (CF) [MIM:219700] |
|
rs397514452
|
Disease |
Hypermethioninemia due to adenosine kinase deficiency (HMAKD) [MIM:614300] |
|
rs397514454
|
Disease |
Hypermethioninemia due to adenosine kinase deficiency (HMAKD) [MIM:614300] |
|
rs397514469
|
Disease |
Acrodysostosis 2, with or without hormone resistance (ACRDYS2) [MIM:614613] |
|
rs397514553
|
Pathogenic |
Epidermal nevus [Human Phenotype Ontology:HP:0010816,MedGen:C0334082,OMIM:162900,Orphanet:ORPHA35125,SNOMED CT:25201003]; Noonan syndrome 1 [MedGen:C4551602,OMIM:163950] |
|
rs397514698
|
Pathogenic |
Capillary malformation [Human Phenotype Ontology:HP:0025104,MedGen:C0340803,OMIM:163000,Orphanet:ORPHA211247]; Capillary malformation [Human Phenotype Ontology:HP:0025104,MedGen:C0340803,OMIM:163000,Orphanet:ORPHA211247]; Sturge-Weber syndrome [MedGen:C0038505,OMIM:185300]; Sturge-Weber syndrome [MedGen:C0038505,OMIM:185300] |
|
rs397514768
|
Pathogenic |
Auriculocondylar syndrome 1 [MedGen:C4551996,OMIM:602483] |
|
rs397515577
|
Pathogenic |
Dystonia 12 [MedGen:C1868681,OMIM:128235,Orphanet:ORPHA71517] |
|
rs397516685
|
Pathogenic/Likely pathogenic |
Aortic aneurysm, familial thoracic 6 [MedGen:C2673186,OMIM:611788]; Thoracic aortic aneurysm and aortic dissection [MedGen:CN118826,Orphanet:ORPHA91387]; not provided [MedGen:CN517202] |
|
rs4494683
|
- |
- |
|
rs483352809
|
Pathogenic |
Leukodystrophy, hypomyelinating, 6 [MedGen:C2676244,OMIM:612438,Orphanet:ORPHA139441]; not provided [MedGen:CN517202] |
|
rs4850168
|
- |
- |
|
rs4850284
|
- |
- |
|
rs527573101
|
- |
- |
|
rs529535145
|
- |
- |
|
rs530783531
|
- |
- |
|
rs532262598
|
- |
- |
|
rs534828213
|
- |
- |
|
rs540403059
|
- |
- |
|
rs540648461
|
- |
- |
|
rs544321005
|
- |
- |
|
rs550374458
|
- |
- |
|
rs552264498
|
- |
- |
|
rs552746066
|
- |
- |
|
rs553548999
|
- |
- |
|
rs556944473
|
- |
- |
|
rs559384888
|
- |
- |
|
rs564547553
|
- |
- |
|
rs564873625
|
- |
- |
|
rs574110525
|
- |
- |
|
rs575750582
|
- |
- |
|
rs575921260
|
- |
- |
|
rs577200385
|
- |
- |
|
rs5832
|
Polymorphism |
- |
|
rs5837
|
Polymorphism |
- |
|
rs587776983
|
Pathogenic |
Autosomal dominant torsion dystonia 4 [MedGen:C1851943,OMIM:128101,Orphanet:ORPHA98805]; Leukodystrophy, hypomyelinating, 6 [MedGen:C2676244,OMIM:612438,Orphanet:ORPHA139441] |
|
rs587777020
|
Pathogenic |
Hypocalcemia, autosomal dominant 2 [MedGen:C3809243,OMIM:615361] |
|
rs587777173
|
Pathogenic |
Spastic paraplegia 45, autosomal recessive [Gene:100322879,MedGen:C3888209,OMIM:613162] |
|
rs587777188
|
Disease |
Acrodysostosis 2, with or without hormone resistance (ACRDYS2) [MIM:614613] |
|
rs587777467
|
Pathogenic |
Leukodystrophy, hypomyelinating, 6 [MedGen:C2676244,OMIM:612438,Orphanet:ORPHA139441]; not provided [MedGen:CN517202] |
|
rs587777468
|
Pathogenic |
Leukodystrophy, hypomyelinating, 6 [MedGen:C2676244,OMIM:612438,Orphanet:ORPHA139441] |
|
rs587777861
|
Disease |
Epileptic encephalopathy, early infantile, 31 (EIEE31) [MIM:616346] |
|
rs587779770
|
Likely pathogenic |
Baraitser-Winter syndrome 1 [MedGen:CN031204,OMIM:243310]; not provided [MedGen:CN517202] |
|
rs587779771
|
Likely pathogenic |
Baraitser-Winter syndrome 1 [MedGen:CN031204,OMIM:243310]; not provided [MedGen:CN517202] |
|
rs587779777
|
Pathogenic/Likely pathogenic |
Baraitser-Winter syndrome 1 [MedGen:CN031204,OMIM:243310]; not provided [MedGen:CN517202] |
|
rs587780587
|
Likely pathogenic |
Mitochondrial DNA-depletion syndrome 3, hepatocerebral [MedGen:C3151513,OMIM:251880,Orphanet:ORPHA279934] |
|
rs587783037
|
Pathogenic |
Bloom syndrome [MedGen:C0005859,OMIM:210900,Orphanet:ORPHA125,SNOMED CT:4434006] |
|
rs587784495
|
Pathogenic |
Lissencephaly 3 [MedGen:C1969029,OMIM:611603,Orphanet:ORPHA102011] |
|
rs62163561
|
- |
- |
|
rs62165871
|
- |
- |
|
rs72554654
|
Disease |
Menkes disease (MNKD) [MIM:309400] |
|
rs727503093
|
Likely pathogenic |
Costello syndrome [MedGen:C0587248,OMIM:218040,Orphanet:ORPHA3071,SNOMED CT:309776008]; Non-small cell lung cancer [Human Phenotype Ontology:HP:0030358,MeSH:D002289,MedGen:C0007131,SNOMED CT:254637007] |
|
rs727503109
|
Disease |
Noonan syndrome 3 (NS3) [MIM:609942] |
|
rs727503110
|
Disease |
Noonan syndrome 3 (NS3) [MIM:609942] |
|
rs727503110
|
Pathogenic |
Cardiofaciocutaneous syndrome 2 [MedGen:C3809005,OMIM:615278]; Noonan syndrome [MeSH:D009634,MedGen:C0028326,Orphanet:ORPHA648,SNOMED CT:205824006]; Noonan syndrome 3 [MedGen:C1860991,OMIM:609942]; Rasopathy [MedGen:CN166718,Orphanet:ORPHA98733]; not provided [MedGen:CN517202]; not specified [MedGen:CN169374] |
|
rs730880029
|
Pathogenic |
Amyotrophic lateral sclerosis 22 with or without frontotemporal dementia [MedGen:C4015512,OMIM:616208] |
|
rs74315507
|
Pathogenic |
Neutrophil immunodeficiency syndrome [MedGen:C1842398,OMIM:608203,Orphanet:ORPHA183707] |
|
rs745806214
|
- |
- |
|
rs745957262
|
- |
- |
|
rs746930990
|
Pathogenic |
Epileptic encephalopathy, early infantile, 35 [MedGen:C4225256,OMIM:616647,Orphanet:ORPHA457375] |
|
rs747281324
|
Disease |
Bloom syndrome (BLM) [MIM:210900] |
|
rs747544959
|
- |
- |
|
rs749042624
|
- |
- |
|
rs749209037
|
- |
- |
|
rs749246739
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs749484894
|
Likely pathogenic |
Severe combined immunodeficiency due to ADA deficiency [MedGen:C1863236,OMIM:102700,Orphanet:ORPHA277] |
|
rs749698460
|
- |
- |
|
rs750203790
|
- |
- |
|
rs750918391
|
- |
- |
|
rs752054462
|
- |
- |
|
rs75205792
|
- |
- |
|
rs752127722
|
- |
- |
|
rs752691887
|
- |
- |
|
rs752819438
|
- |
- |
|
rs752868920
|
- |
- |
|
rs753258609
|
- |
- |
|
rs753634322
|
- |
- |
|
rs754337553
|
- |
- |
|
rs754465217
|
- |
- |
|
rs754960642
|
- |
- |
|
rs755051255
|
- |
- |
|
rs755290317
|
- |
- |
|
rs757304363
|
- |
- |
|
rs758029716
|
- |
- |
|
rs759631177
|
- |
- |
|
rs760270633
|
Disease |
Epileptic encephalopathy, early infantile, 31 (EIEE31) [MIM:616346] |
|
rs760967532
|
- |
- |
|
rs761483742
|
- |
- |
|
rs761592113
|
- |
- |
|
rs762276870
|
- |
- |
|
rs762550967
|
Disease |
Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 4 (PEOB4) [MIM:617070] |
|
rs763187569
|
- |
- |
|
rs763589704
|
- |
- |
|
rs763615602
|
Disease |
Portal hypertension, non-cirrhotic (NCPH) [MIM:617068] |
|
rs763615602
|
Pathogenic/Likely pathogenic |
MITOCHONDRIAL DNA DEPLETION SYNDROME 3 [na]; Portal hypertension, noncirrhotic [MedGen:C4310735,OMIM:617068]; Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 4 [MedGen:C4310733,OMIM:617070,Orphanet:ORPHA329314] |
|
rs763630436
|
- |
- |
|
rs764400206
|
- |
- |
|
rs764422810
|
- |
- |
|
rs764729616
|
- |
- |
|
rs765408826
|
- |
- |
|
rs765804497
|
- |
- |
|
rs766317703
|
- |
- |
|
rs766606700
|
- |
- |
|
rs766789172
|
- |
- |
|
rs767632371
|
- |
- |
|
rs768361068
|
- |
- |
|
rs768422992
|
- |
- |
|
rs768978971
|
- |
- |
|
rs770248150
|
Unclassified |
A colorectal cancer sample |
|
rs770248150
|
Pathogenic/Likely pathogenic |
Adenocarcinoma of stomach [MedGen:C0278701]; Carcinoma of esophagus [Human Phenotype Ontology:HP:0011459,MedGen:C0152018,Orphanet:ORPHA70482]; Hepatocellular carcinoma [Human Phenotype Ontology:HP:0001402,MedGen:C2239176,OMIM:114550,Orphanet:ORPHA88673,SNOMED CT:187769009,SNOMED CT:25370001]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Multiple myeloma [Human Phenotype Ontology:HP:0006775,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:ORPHA29073,SNOMED CT:109989006,SNOMED CT:55921005]; Neoplasm of the large intestine [Human Phenotype Ontology:HP:0100834,MeSH:D015179,MedGen:C0009404,SNOMED CT:126837005] |
|
rs770431044
|
- |
- |
|
rs77101217
|
Pathogenic |
Cystic fibrosis [MedGen:C0010674,OMIM:219700,Orphanet:ORPHA586,SNOMED CT:190905008]; not provided [MedGen:CN517202] |
|
rs771034023
|
- |
- |
|
rs77172375
|
- |
- |
|
rs771776126
|
- |
- |
|
rs772319638
|
- |
- |
|
rs77239104
|
- |
- |
|
rs772893062
|
- |
- |
|
rs773222168
|
- |
- |
|
rs773518859
|
- |
- |
|
rs773901293
|
- |
- |
|
rs774406575
|
- |
- |
|
rs775032909
|
- |
- |
|
rs775097749
|
- |
- |
|
rs775209507
|
- |
- |
|
rs775316562
|
- |
- |
|
rs775915028
|
- |
- |
|
rs776501959
|
- |
- |
|
rs778404835
|
- |
- |
|
rs780526529
|
Disease |
Cystic fibrosis (CF) [MIM:219700] |
|
rs780813956
|
- |
- |
|
rs78160297
|
- |
- |
|
rs782166627
|
- |
- |
|
rs782463394
|
- |
- |
|
rs782573516
|
- |
- |
|
rs786204847
|
Disease |
Singleton-Merten syndrome 2 (SGMRT2) [MIM:616298] |
|
rs786204848
|
Disease |
Singleton-Merten syndrome 2 (SGMRT2) [MIM:616298] |
|
rs786205585
|
Likely pathogenic |
Baraitser-Winter syndrome 1 [MedGen:CN031204,OMIM:243310] |
|
rs796052223
|
Disease |
Mental retardation, X-linked 102 (MRX102) [MIM:300958] |
|
rs796052231
|
Disease |
Mental retardation, X-linked 102 (MRX102) [MIM:300958] |
|
rs797045025
|
Disease |
Mental retardation, X-linked 102 (MRX102) [MIM:300958] |
|
rs797045203
|
Pathogenic |
McCune-Albright syndrome [MedGen:C0242292,OMIM:174800,Orphanet:ORPHA562] |
|
rs797045376
|
Likely pathogenic |
Menkes kinky-hair syndrome [MedGen:C0022716,OMIM:309400,Orphanet:ORPHA565,SNOMED CT:59178007] |
|
rs797045378
|
Pathogenic |
Menkes kinky-hair syndrome [MedGen:C0022716,OMIM:309400,Orphanet:ORPHA565,SNOMED CT:59178007] |
|
rs797046075
|
Pathogenic/Likely pathogenic |
Polymicrogyria, asymmetric [MedGen:C3552236,OMIM:610031]; not provided [MedGen:CN517202] |
|
rs80338675
|
Disease |
ARTS syndrome (ARTS) [MIM:301835] |
|
rs863224876
|
Likely pathogenic |
Pseudohypoparathyroidism [Human Phenotype Ontology:HP:0000852,MedGen:C3494506,OMIM:103580,Orphanet:ORPHA79443]; Pseudohypoparathyroidism type 1C [MedGen:C2932716,OMIM:612462,Orphanet:ORPHA79444] |
|
rs864321676
|
Pathogenic |
Michelin-tire baby [MedGen:C4551592,OMIM:156610,SNOMED CT:239142006] |
|
rs864321677
|
Pathogenic |
Michelin-tire baby [MedGen:C4551592,OMIM:156610,SNOMED CT:239142006] |
|
rs866311885
|
- |
- |
|
rs869025271
|
Pathogenic |
Oocyte maturation defect 2 [MedGen:C4225210,OMIM:616780] |
|
rs869025273
|
Pathogenic |
Oocyte maturation defect 2 [MedGen:C4225210,OMIM:616780] |
|
rs869025593
|
Pathogenic |
Arts syndrome [MedGen:C0796028,OMIM:301835,Orphanet:ORPHA1187]; Deafness, X-linked 1 [MedGen:C1844677,OMIM:304500] |
|
rs869025609
|
Pathogenic |
Oocyte maturation defect 2 [MedGen:C4225210,OMIM:616780] |
|
rs869312692
|
Pathogenic |
Mental retardation, X-linked 102 [MedGen:C4085582,OMIM:300958,Orphanet:ORPHA457260] |
|
rs869312702
|
Pathogenic/Likely pathogenic |
Cerebellar ataxia [Human Phenotype Ontology:HP:0001251,MedGen:C0007758,SNOMED CT:85102008]; Epileptic encephalopathy [Human Phenotype Ontology:HP:0200134,MedGen:C0543888]; Epileptic encephalopathy, early infantile, 31 [MedGen:C4225357,OMIM:616346]; Global developmental delay [Human Phenotype Ontology:HP:0001263,MedGen:C0557874]; Muscular hypotonia [Human Phenotype Ontology:HP:0001252,MedGen:C0026827]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; Stereotypy [Human Phenotype Ontology:HP:0000733,MedGen:C0038273] |
|
rs875989802
|
Likely pathogenic |
Mental retardation, X-linked 102 [MedGen:C4085582,OMIM:300958,Orphanet:ORPHA457260] |
|
rs875989840
|
Disease |
Striatal degeneration, autosomal dominant 2 (ADSD2) [MIM:616922] |
|
rs875989841
|
Disease |
Striatal degeneration, autosomal dominant 2 (ADSD2) [MIM:616922] |
|
rs878853256
|
Pathogenic |
Cortical dysplasia, complex, with other brain malformations 1 [MedGen:C3808397,OMIM:614039] |
|
rs878854374
|
Likely pathogenic |
Nemaline myopathy 3 [MedGen:C3711389,OMIM:161800,Orphanet:ORPHA98904] |
|
rs879255688
|
Disease |
Encephalopathy due to defective mitochondrial and peroxisomal fission 1 (EMPF1) [MIM:614388] |
|
rs886037663
|
Pathogenic |
Cortical dysplasia, complex, with other brain malformations 5 [MedGen:C3810407,OMIM:615763] |
|
rs886041007
|
Pathogenic |
Leukodystrophy, hypomyelinating, 6 [MedGen:C2676244,OMIM:612438,Orphanet:ORPHA139441] |
|
rs886041010
|
Pathogenic |
Leukodystrophy, hypomyelinating, 6 [MedGen:C2676244,OMIM:612438,Orphanet:ORPHA139441] |
|
rs886041014
|
Pathogenic |
Leukodystrophy, hypomyelinating, 6 [MedGen:C2676244,OMIM:612438,Orphanet:ORPHA139441] |
|
rs895006179
|
- |
- |
|
rs896550845
|
- |
- |
|
rs9636610
|
- |
- |
|
rs985929069
|
- |
- |
hsa00232
|
Caffeine metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
-
|
Pathogenic |
Glaucoma 3, primary congenital, A [MedGen:C1856439,OMIM:231300] |
|
rs104893628
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs148542782
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs192453952
|
- |
- |
|
rs28936701
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs557905773
|
- |
- |
|
rs55989760
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs56010818
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs57865060
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs66583685
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs669884
|
Polymorphism |
- |
|
rs72549378
|
Disease |
Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] |
|
rs752456881
|
Polymorphism |
- |
|
rs777678299
|
- |
- |
|
rs9341250
|
Polymorphism |
- |
hsa00240
|
Pyrimidine metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
-
|
Disease |
Postaxial acrofacial dysostosis (POADS) [MIM:263750] |
|
-
|
Unclassified |
Spastic paraplegia 45, autosomal recessive (SPG45) [MIM:613162] |
|
rs1000661676
|
- |
- |
|
rs104894028
|
Pathogenic |
Uridine 5-prime monophosphate hydrolase deficiency, hemolytic anemia due to [MedGen:C1849507,OMIM:266120,Orphanet:ORPHA35120] |
|
rs104894029
|
Pathogenic |
Uridine 5-prime monophosphate hydrolase deficiency, hemolytic anemia due to [MedGen:C1849507,OMIM:266120,Orphanet:ORPHA35120] |
|
rs104894452
|
Disease |
Purine nucleoside phosphorylase deficiency (PNPD) [MIM:613179] |
|
rs1057516671
|
Likely pathogenic |
Dihydropyrimidine dehydrogenase deficiency [MedGen:C2720286,OMIM:274270] |
|
rs1064792867
|
Pathogenic |
Mitochondrial DNA depletion syndrome 1 (MNGIE type) [MedGen:C4551995,OMIM:603041] |
|
rs115222424
|
- |
- |
|
rs1212037891
|
- |
- |
|
rs121913037
|
Disease |
Mitochondrial DNA depletion syndrome 1, MNGIE type (MTDPS1) [MIM:603041] |
|
rs121913039
|
Likely pathogenic |
Mitochondrial DNA depletion syndrome 1 (MNGIE type) [MedGen:C4551995,OMIM:603041]; not provided [MedGen:CN517202] |
|
rs121913041
|
Pathogenic |
Mitochondrial DNA depletion syndrome 1 (MNGIE type) [MedGen:C4551995,OMIM:603041] |
|
rs121917887
|
Polymorphism |
- |
|
rs1222936229
|
- |
- |
|
rs1270571213
|
Disease |
Interstitial nephritis, karyomegalic (KMIN) [MIM:614817] |
|
rs138110445
|
- |
- |
|
rs138825464
|
- |
- |
|
rs140602333
|
- |
- |
|
rs1440561057
|
- |
- |
|
rs146054415
|
- |
- |
|
rs147984615
|
- |
- |
|
rs149977726
|
Disease |
Mitochondrial DNA depletion syndrome 1, MNGIE type (MTDPS1) [MIM:603041] |
|
rs150181226
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs17843776
|
- |
- |
|
rs201047833
|
- |
- |
|
rs201461737
|
- |
- |
|
rs201761717
|
- |
- |
|
rs267606699
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs267606700
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs267606701
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs34082669
|
Polymorphism |
- |
|
rs368327291
|
- |
- |
|
rs369010777
|
- |
- |
|
rs370539470
|
- |
- |
|
rs372332465
|
- |
- |
|
rs372631124
|
Likely pathogenic |
Desbuquois dysplasia 1 [MedGen:C4012146,OMIM:251450]; EPIPHYSEAL DYSPLASIA, MULTIPLE, 7 [MedGen:C4540251,OMIM:617719] |
|
rs387907280
|
Pathogenic |
Interstitial nephritis, karyomegalic [MedGen:C3553774,OMIM:614817,Orphanet:ORPHA401996] |
|
rs527580106
|
- |
- |
|
rs56005131
|
- |
- |
|
rs564873625
|
- |
- |
|
rs587777173
|
Pathogenic |
Spastic paraplegia 45, autosomal recessive [Gene:100322879,MedGen:C3888209,OMIM:613162] |
|
rs59086055
|
- |
- |
|
rs749246739
|
Disease |
Desbuquois dysplasia 1 (DBQD1) [MIM:251450] |
|
rs749313159
|
- |
- |
|
rs751703979
|
Disease |
Interstitial nephritis, karyomegalic (KMIN) [MIM:614817] |
|
rs752868920
|
- |
- |
|
rs753379195
|
- |
- |
|
rs756580671
|
- |
- |
|
rs759225435
|
- |
- |
|
rs760099482
|
- |
- |
|
rs761665644
|
Pathogenic |
Mitochondrial DNA depletion syndrome 1 (MNGIE type) [MedGen:C4551995,OMIM:603041] |
|
rs762276870
|
- |
- |
|
rs762529775
|
- |
- |
|
rs763322504
|
- |
- |
|
rs763355511
|
- |
- |
|
rs763630436
|
- |
- |
|
rs765396900
|
- |
- |
|
rs765408826
|
- |
- |
|
rs770371904
|
Likely pathogenic |
Desbuquois dysplasia 1 [MedGen:C4012146,OMIM:251450] |
|
rs771776626
|
- |
- |
|
rs773499729
|
- |
- |
|
rs773721953
|
- |
- |
|
rs775032909
|
- |
- |
|
rs775316562
|
- |
- |
|
rs7867616
|
- |
- |
|
rs895833357
|
- |
- |
|
rs967806646
|
- |
- |
hsa00250
|
Alanine, aspartate and glutamate metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
-
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
-
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
-
|
Disease |
Succinic semialdehyde dehydrogenase deficiency (SSADHD) [MIM:271980] |
|
rs1014551540
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs1036185928
|
Pathogenic/Likely pathogenic |
Adenylosuccinate lyase deficiency [MedGen:C0268126,OMIM:103050,Orphanet:ORPHA46,SNOMED CT:15285008]; not provided [MedGen:CN517202] |
|
rs1046009538
|
- |
- |
|
rs1048119191
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs104894550
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs104894551
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs104894553
|
- |
- |
|
rs104894553
|
Likely pathogenic |
Canavan disease, mild [MedGen:C4017127]; Spongy degeneration of central nervous system [MedGen:C0206307,OMIM:271900,Orphanet:ORPHA141,SNOMED CT:80544005] |
|
rs115014558
|
Polymorphism |
- |
|
rs1176072053
|
- |
- |
|
rs118203982
|
Pathogenic |
Succinate-semialdehyde dehydrogenase deficiency [MedGen:C0268631,OMIM:271980,Orphanet:ORPHA22,SNOMED CT:49748000]; not provided [MedGen:CN517202] |
|
rs1202306773
|
- |
- |
|
rs1202306773
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs121434578
|
Pathogenic |
Gamma-aminobutyric acid transaminase deficiency [MedGen:C0342708,OMIM:613163,Orphanet:ORPHA2066,SNOMED CT:237941007] |
|
rs121908520
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908521
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs121908522
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908524
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908526
|
- |
- |
|
rs121908526
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908527
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908528
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs121908529
|
Pathogenic/Likely pathogenic |
Primary hyperoxaluria [MedGen:C0020501,Orphanet:ORPHA416,SNOMED CT:17901006]; Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001]; not provided [MedGen:CN517202] |
|
rs121908530
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908638
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs121908645
|
Likely pathogenic |
Citrullinemia type I [MedGen:C0175683,OMIM:215700,Orphanet:ORPHA187] |
|
rs121909732
|
Pathogenic |
Hyperinsulinism-hyperammonemia syndrome [MedGen:C1847555,OMIM:606762,Orphanet:ORPHA35878] |
|
rs121909733
|
Pathogenic |
Hyperinsulinism-hyperammonemia syndrome [MedGen:C1847555,OMIM:606762,Orphanet:ORPHA35878] |
|
rs121909734
|
Pathogenic |
Hyperinsulinism-hyperammonemia syndrome [MedGen:C1847555,OMIM:606762,Orphanet:ORPHA35878] |
|
rs121912592
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs121912596
|
- |
- |
|
rs121912596
|
Pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs1235382146
|
- |
- |
|
rs1242028775
|
- |
- |
|
rs1242028775
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1275599086
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1280211937
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs12948217
|
Pathogenic |
Canavan Disease, Familial Form [MedGen:C0751663]; Spongy degeneration of central nervous system [MedGen:C0206307,OMIM:271900,Orphanet:ORPHA141,SNOMED CT:80544005]; not provided [MedGen:CN517202] |
|
rs1319489001
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1326526453
|
- |
- |
|
rs1326526453
|
Disease |
Succinic semialdehyde dehydrogenase deficiency (SSADHD) [MIM:271980] |
|
rs1330995774
|
Pathogenic |
Gamma-aminobutyric acid transaminase deficiency [MedGen:C0342708,OMIM:613163,Orphanet:ORPHA2066,SNOMED CT:237941007] |
|
rs13408961
|
Polymorphism |
- |
|
rs1364564756
|
- |
- |
|
rs137852937
|
Disease |
Hyperprolinemia 2 (HYRPRO2) [MIM:239510] |
|
rs1392559810
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1392934477
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs140581464
|
- |
- |
|
rs140992177
|
Polymorphism |
- |
|
rs1414143303
|
Pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs1414684396
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs142114432
|
- |
- |
|
rs1446467099
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs145087265
|
Disease |
Succinic semialdehyde dehydrogenase deficiency (SSADHD) [MIM:271980] |
|
rs146525143
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs149518280
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs1553512642
|
Likely pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs1553513429
|
Likely pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs1553518389
|
Pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs180177155
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177156
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177157
|
- |
- |
|
rs180177157
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177161
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177162
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177163
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177173
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177182
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177184
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177185
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177186
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177189
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177191
|
- |
- |
|
rs180177191
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177195
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177197
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177198
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177199
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177202
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177203
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177208
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177210
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177211
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177214
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177217
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177225
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177236
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177243
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177244
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177247
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177248
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177250
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177252
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177253
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177259
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177264
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177269
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177271
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177272
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177277
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177279
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177284
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177287
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177288
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177289
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177290
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177292
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177303
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs200207185
|
- |
- |
|
rs201623252
|
Polymorphism |
- |
|
rs201623252
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs202092105
|
- |
- |
|
rs202107577
|
Likely pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs202108064
|
- |
- |
|
rs28940279
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs34664134
|
- |
- |
|
rs34885252
|
Polymorphism |
- |
|
rs368127499
|
- |
- |
|
rs369061090
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs371265106
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs372399525
|
- |
- |
|
rs373458753
|
Disease |
Adenylosuccinase deficiency (ADSLD) [MIM:103050] |
|
rs375628463
|
Disease |
Succinic semialdehyde dehydrogenase deficiency (SSADHD) [MIM:271980] |
|
rs375736464
|
Likely pathogenic |
Spongy degeneration of central nervous system [MedGen:C0206307,OMIM:271900,Orphanet:ORPHA141,SNOMED CT:80544005] |
|
rs377342766
|
- |
- |
|
rs4426527
|
Polymorphism |
- |
|
rs536205988
|
- |
- |
|
rs540648461
|
- |
- |
|
rs552474817
|
- |
- |
|
rs556944473
|
- |
- |
|
rs61729604
|
- |
- |
|
rs62621664
|
Polymorphism |
- |
|
rs72552283
|
Disease |
Succinic semialdehyde dehydrogenase deficiency (SSADHD) [MIM:271980] |
|
rs73106685
|
Polymorphism |
- |
|
rs74205173
|
- |
- |
|
rs748725086
|
- |
- |
|
rs749093544
|
- |
- |
|
rs749313159
|
- |
- |
|
rs749568989
|
- |
- |
|
rs750670270
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs750905647
|
- |
- |
|
rs751156234
|
- |
- |
|
rs752339705
|
- |
- |
|
rs752339705
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs753379195
|
- |
- |
|
rs756337473
|
- |
- |
|
rs756437332
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs757205958
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs759201450
|
Pathogenic |
Congenital hyperammonemia, type I [MedGen:C4082171,OMIM:237300,Orphanet:ORPHA147,SNOMED CT:62522004] |
|
rs759836341
|
- |
- |
|
rs761064915
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs762387914
|
- |
- |
|
rs762387914
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs762529775
|
- |
- |
|
rs763355511
|
- |
- |
|
rs763589704
|
- |
- |
|
rs765196603
|
- |
- |
|
rs765561257
|
Disease |
Succinic semialdehyde dehydrogenase deficiency (SSADHD) [MIM:271980] |
|
rs765649468
|
- |
- |
|
rs765804497
|
- |
- |
|
rs765910470
|
- |
- |
|
rs768215008
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs769018733
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs769085115
|
- |
- |
|
rs770706390
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs770944877
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs771385956
|
- |
- |
|
rs771794639
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs773049803
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs774323189
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs774496720
|
- |
- |
|
rs775163147
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs775305020
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs776777887
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs777233486
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs777828000
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs778448554
|
- |
- |
|
rs779013628
|
- |
- |
|
rs779259590
|
- |
- |
|
rs781581679
|
- |
- |
|
rs796052057
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052059
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052060
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052061
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs796052062
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052063
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052064
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052065
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052066
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs797045597
|
Likely pathogenic |
Hyperinsulinism-hyperammonemia syndrome [MedGen:C1847555,OMIM:606762,Orphanet:ORPHA35878] |
|
rs80358214
|
Disease |
Congenital systemic glutamine deficiency (CSGD) [MIM:610015] |
|
rs886043944
|
- |
- |
|
rs923744167
|
- |
- |
|
rs933813349
|
Disease |
Carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300] |
|
rs936192871
|
Disease |
Citrullinemia 1 (CTLN1) [MIM:215700] |
|
rs937670540
|
Disease |
Canavan disease (CAND) [MIM:271900] |
rn00254
|
Aflatoxin biosynthesis
|
dbSNP |
Type |
Disease name |
|
rs1357271377
|
Unclassified |
A colorectal cancer sample |
hsa00260
|
Glycine, serine and threonine metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
-
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs1041969
|
Polymorphism |
- |
|
rs104894036
|
Disease |
Phosphoserine phosphatase deficiency (PSPHD) [MIM:614023] |
|
rs104894694
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs1126673
|
- |
- |
|
rs115014558
|
Polymorphism |
- |
|
rs1170128038
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs117195882
|
- |
- |
|
rs1176072053
|
- |
- |
|
rs1191141364
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs1209918450
|
- |
- |
|
rs121907889
|
Pathogenic |
Glycine N-methyltransferase deficiency [MedGen:C1847720,OMIM:606664,Orphanet:ORPHA289891] |
|
rs121908331
|
Likely pathogenic |
Dimethylglycine dehydrogenase deficiency [MedGen:C1853892,OMIM:605850,Orphanet:ORPHA243343]; not provided [MedGen:CN517202] |
|
rs121908520
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908521
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs121908522
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908524
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908526
|
- |
- |
|
rs121908526
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908527
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121908528
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs121908529
|
Pathogenic/Likely pathogenic |
Primary hyperoxaluria [MedGen:C0020501,Orphanet:ORPHA416,SNOMED CT:17901006]; Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001]; not provided [MedGen:CN517202] |
|
rs121908530
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs121909272
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs121964925
|
Disease |
Bisphosphoglycerate mutase deficiency (BPGMD) [MIM:222800] |
|
rs121964962
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964967
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964969
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964972
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964973
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964988
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964991
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964993
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs1229984
|
Polymorphism |
- |
|
rs1239594775
|
- |
- |
|
rs1311224546
|
- |
- |
|
rs1327662246
|
- |
- |
|
rs13408961
|
Polymorphism |
- |
|
rs1366833576
|
- |
- |
|
rs1371496558
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs138025751
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs139166171
|
- |
- |
|
rs1393023702
|
- |
- |
|
rs139396226
|
- |
- |
|
rs140778208
|
Polymorphism |
- |
|
rs140992177
|
Polymorphism |
- |
|
rs142114432
|
- |
- |
|
rs142814307
|
Disease |
Cerebral creatine deficiency syndrome 3 (CCDS3) [MIM:612718] |
|
rs1441030187
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs144503922
|
- |
- |
|
rs1447665588
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs1450940305
|
- |
- |
|
rs1463626619
|
- |
- |
|
rs1464223176
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs146525143
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs1471862905
|
- |
- |
|
rs148865119
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs149119723
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs149408684
|
- |
- |
|
rs150338273
|
Polymorphism |
- |
|
rs180177155
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177156
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177157
|
- |
- |
|
rs180177157
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177161
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177162
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177163
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177173
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177181
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177182
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177184
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177185
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177186
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177189
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177191
|
- |
- |
|
rs180177191
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177195
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177197
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177198
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177199
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177202
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177203
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177208
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177210
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177211
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177214
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177217
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177225
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177236
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177238
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177243
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177244
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177247
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177248
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177250
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177252
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177253
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177259
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177262
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177263
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177264
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177269
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177271
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177272
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177277
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177279
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177284
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177287
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177288
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177289
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177290
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs180177292
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177303
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs180177312
|
Pathogenic |
Primary hyperoxaluria, type II [MedGen:C0268165,OMIM:260000,Orphanet:ORPHA93599,SNOMED CT:40951006] |
|
rs180177314
|
Pathogenic |
Primary hyperoxaluria [MedGen:C0020501,Orphanet:ORPHA416,SNOMED CT:17901006]; Primary hyperoxaluria, type II [MedGen:C0268165,OMIM:260000,Orphanet:ORPHA93599,SNOMED CT:40951006] |
|
rs180177322
|
- |
- |
|
rs180177322
|
Pathogenic |
Primary hyperoxaluria, type II [MedGen:C0268165,OMIM:260000,Orphanet:ORPHA93599,SNOMED CT:40951006] |
|
rs180177323
|
Pathogenic |
Primary hyperoxaluria, type II [MedGen:C0268165,OMIM:260000,Orphanet:ORPHA93599,SNOMED CT:40951006] |
|
rs1805073
|
- |
- |
|
rs1805074
|
- |
- |
|
rs182600362
|
- |
- |
|
rs199948079
|
Likely pathogenic |
Homocystinuria due to CBS deficiency [MedGen:C0751202,OMIM:236200,Orphanet:ORPHA394] |
|
rs200244541
|
- |
- |
|
rs200543916
|
- |
- |
|
rs200833152
|
Polymorphism |
- |
|
rs201256313
|
- |
- |
|
rs201835306
|
- |
- |
|
rs201934016
|
- |
- |
|
rs202108064
|
- |
- |
|
rs202241708
|
- |
- |
|
rs2066702
|
Polymorphism |
- |
|
rs267606947
|
Likely pathogenic |
Neu-Laxova syndrome 1 [MedGen:C4551478,OMIM:256520]; Phosphoglycerate dehydrogenase deficiency [MedGen:C1866174,OMIM:601815] |
|
rs267606947
|
Disease |
Phosphoglycerate dehydrogenase deficiency (PHGDHD) [MIM:601815] |
|
rs267606949
|
Disease |
Phosphoglycerate dehydrogenase deficiency (PHGDHD) [MIM:601815] |
|
rs28730628
|
Polymorphism |
- |
|
rs28941786
|
Disease |
Cystathioninuria (CSTNU) [MIM:219500] |
|
rs34664134
|
- |
- |
|
rs34885252
|
Polymorphism |
- |
|
rs35385902
|
Polymorphism |
- |
|
rs367861880
|
- |
- |
|
rs370421531
|
Pathogenic |
Cerebral creatine deficiency syndrome [MedGen:CN227588,Orphanet:ORPHA79172]; Deficiency of guanidinoacetate methyltransferase [MedGen:C0574080,OMIM:612736,Orphanet:ORPHA382,SNOMED CT:124239003]; not provided [MedGen:CN517202] |
|
rs371260220
|
- |
- |
|
rs371807385
|
- |
- |
|
rs372027428
|
Polymorphism |
- |
|
rs372399525
|
- |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs3733890
|
- |
- |
|
rs374024099
|
- |
- |
|
rs376106786
|
- |
- |
|
rs376982466
|
Disease |
Cerebral creatine deficiency syndrome 3 (CCDS3) [MIM:612718] |
|
rs377578020
|
Disease |
Cerebral creatine deficiency syndrome 3 (CCDS3) [MIM:612718] |
|
rs377699817
|
- |
- |
|
rs397514708
|
Pathogenic |
Arginine:glycine amidinotransferase deficiency [MedGen:C2675179,OMIM:612718,Orphanet:ORPHA35704] |
|
rs4426527
|
Polymorphism |
- |
|
rs536205988
|
- |
- |
|
rs543745251
|
- |
- |
|
rs545372800
|
- |
- |
|
rs552474817
|
- |
- |
|
rs555959266
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs556400964
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs56251804
|
- |
- |
|
rs565509522
|
- |
- |
|
rs56709544
|
- |
- |
|
rs571416651
|
- |
- |
|
rs587777775
|
Pathogenic |
Neu-Laxova syndrome 1 [MedGen:C4551478,OMIM:256520] |
|
rs61729604
|
- |
- |
|
rs73106685
|
Polymorphism |
- |
|
rs74205173
|
- |
- |
|
rs74451421
|
- |
- |
|
rs746575551
|
Likely pathogenic |
Homocystinuria due to CBS deficiency [MedGen:C0751202,OMIM:236200,Orphanet:ORPHA394] |
|
rs747089244
|
- |
- |
|
rs747209153
|
- |
- |
|
rs747608698
|
- |
- |
|
rs749568989
|
- |
- |
|
rs750389182
|
- |
- |
|
rs750905647
|
- |
- |
|
rs751972865
|
Disease |
Bisphosphoglycerate mutase deficiency (BPGMD) [MIM:222800] |
|
rs754079169
|
- |
- |
|
rs755952006
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs756437332
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs757985056
|
- |
- |
|
rs758236584
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs758916006
|
- |
- |
|
rs75967634
|
- |
- |
|
rs759836341
|
- |
- |
|
rs760214620
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs760782027
|
- |
- |
|
rs761647392
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs762065361
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs762757818
|
- |
- |
|
rs762922297
|
- |
- |
|
rs763392896
|
- |
- |
|
rs763835246
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs765070826
|
- |
- |
|
rs765649468
|
- |
- |
|
rs765910470
|
- |
- |
|
rs766553422
|
- |
- |
|
rs768492092
|
- |
- |
|
rs769763635
|
- |
- |
|
rs771298943
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs771385956
|
- |
- |
|
rs773503933
|
- |
- |
|
rs773734233
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs774144200
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs774423823
|
- |
- |
|
rs776400068
|
- |
- |
|
rs779013628
|
- |
- |
|
rs779270933
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs780172339
|
- |
- |
|
rs781266642
|
- |
- |
|
rs781510366
|
- |
- |
|
rs78599516
|
- |
- |
|
rs786204545
|
- |
- |
|
rs786204545
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052057
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052059
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052060
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052061
|
Disease |
Hyperoxaluria primary 1 (HP1) [MIM:259900] |
|
rs796052062
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052063
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052064
|
Likely pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052065
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052066
|
Pathogenic |
Primary hyperoxaluria, type I [MedGen:C0268164,OMIM:259900,Orphanet:ORPHA93598,SNOMED CT:65520001] |
|
rs796052079
|
- |
- |
|
rs796052079
|
Pathogenic |
Primary hyperoxaluria, type II [MedGen:C0268165,OMIM:260000,Orphanet:ORPHA93599,SNOMED CT:40951006] |
|
rs80338734
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs864321678
|
Disease |
Glycine N-methyltransferase deficiency (GNMT deficiency) [MIM:606664] |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs886054247
|
Likely pathogenic |
Deficiency of guanidinoacetate methyltransferase [MedGen:C0574080,OMIM:612736,Orphanet:ORPHA382,SNOMED CT:124239003] |
|
rs946974235
|
- |
- |
|
rs964520949
|
- |
- |
rn00261
|
Monobactam biosynthesis
|
dbSNP |
Type |
Disease name |
|
rs140928408
|
- |
- |
|
rs183618664
|
- |
- |
|
rs775097749
|
- |
- |
hsa00270
|
Cysteine and methionine metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs1011808569
|
- |
- |
|
rs1018955701
|
- |
- |
|
rs1170128038
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs118203916
|
Pathogenic |
Tyrosinemia type 2 [MedGen:C0268487,OMIM:276600,Orphanet:ORPHA28378] |
|
rs118204001
|
Pathogenic |
Hepatic methionine adenosyltransferase deficiency [MedGen:C0268621,OMIM:250850,Orphanet:ORPHA168598,SNOMED CT:57835009] |
|
rs118204002
|
Pathogenic |
Hepatic methionine adenosyltransferase deficiency [MedGen:C0268621,OMIM:250850,Orphanet:ORPHA168598,SNOMED CT:57835009] |
|
rs118204005
|
Pathogenic |
Hepatic methionine adenosyltransferase deficiency [MedGen:C0268621,OMIM:250850,Orphanet:ORPHA168598,SNOMED CT:57835009] |
|
rs1191141364
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121908943
|
Pathogenic |
Centromeric instability of chromosomes 1,9 and 16 and immunodeficiency [MedGen:C4551557,OMIM:242860,SNOMED CT:234633000] |
|
rs121913580
|
Pathogenic |
METHYLCOBALAMIN DEFICIENCY, cblG TYPE [MedGen:C1855128,OMIM:250940,Orphanet:ORPHA2170] |
|
rs121964962
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964963
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964966
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964967
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964968
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964969
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964970
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs121964972
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs1311224546
|
- |
- |
|
rs1347651454
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs1366833576
|
- |
- |
|
rs137852727
|
Pathogenic |
Chromosome 9q deletion syndrome [MedGen:C0795833,OMIM:610253,Orphanet:ORPHA261494] |
|
rs138556525
|
Pathogenic |
Hepatic methionine adenosyltransferase deficiency [MedGen:C0268621,OMIM:250850,Orphanet:ORPHA168598,SNOMED CT:57835009]; not provided [MedGen:CN517202] |
|
rs139166171
|
- |
- |
|
rs1408616607
|
- |
- |
|
rs142847271
|
- |
- |
|
rs144503922
|
- |
- |
|
rs1464223176
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs1467808566
|
- |
- |
|
rs149119723
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs181309650
|
- |
- |
|
rs182600362
|
- |
- |
|
rs184074326
|
- |
- |
|
rs199586854
|
- |
- |
|
rs199948079
|
Likely pathogenic |
Homocystinuria due to CBS deficiency [MedGen:C0751202,OMIM:236200,Orphanet:ORPHA394] |
|
rs201222740
|
- |
- |
|
rs267606947
|
Likely pathogenic |
Neu-Laxova syndrome 1 [MedGen:C4551478,OMIM:256520]; Phosphoglycerate dehydrogenase deficiency [MedGen:C1866174,OMIM:601815] |
|
rs267606947
|
Disease |
Phosphoglycerate dehydrogenase deficiency (PHGDHD) [MIM:601815] |
|
rs267606949
|
Disease |
Phosphoglycerate dehydrogenase deficiency (PHGDHD) [MIM:601815] |
|
rs267607076
|
Disease |
X-linked syndromic mental retardation Snyder-Robinson type (MRXSSR) [MIM:309583] |
|
rs28941786
|
Disease |
Cystathioninuria (CSTNU) [MIM:219500] |
|
rs371260220
|
- |
- |
|
rs3733890
|
- |
- |
|
rs373782713
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs397515551
|
Pathogenic |
Snyder Robinson syndrome [MedGen:C0796160,OMIM:309583,Orphanet:ORPHA3063] |
|
rs397515552
|
Pathogenic |
Snyder Robinson syndrome [MedGen:C0796160,OMIM:309583,Orphanet:ORPHA3063] |
|
rs555959266
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs56709544
|
- |
- |
|
rs587777775
|
Pathogenic |
Neu-Laxova syndrome 1 [MedGen:C4551478,OMIM:256520] |
|
rs72558181
|
Pathogenic |
Hepatic methionine adenosyltransferase deficiency [MedGen:C0268621,OMIM:250850,Orphanet:ORPHA168598,SNOMED CT:57835009]; not provided [MedGen:CN517202] |
|
rs749670133
|
- |
- |
|
rs749758704
|
- |
- |
|
rs755052126
|
- |
- |
|
rs755106884
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs755952006
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs758236584
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs758916006
|
- |
- |
|
rs760214620
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs761647392
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs762065361
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs763764381
|
- |
- |
|
rs763835246
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs764303638
|
- |
- |
|
rs765582096
|
- |
- |
|
rs765882602
|
- |
- |
|
rs766480924
|
- |
- |
|
rs768158086
|
- |
- |
|
rs771011269
|
- |
- |
|
rs771298943
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs773734233
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs774423823
|
- |
- |
|
rs777019739
|
- |
- |
|
rs777459947
|
- |
- |
|
rs777954556
|
Disease |
Lactate dehydrogenase B deficiency (LDHBD) [MIM:614128] |
|
rs779270933
|
Disease |
Cystathionine beta-synthase deficiency (CBSD) [MIM:236200] |
|
rs780172339
|
- |
- |
|
rs780634137
|
- |
- |
|
rs781266642
|
- |
- |
|
rs781510366
|
- |
- |
|
rs781739244
|
- |
- |
|
rs782308462
|
Disease |
Epileptic encephalopathy, early infantile, 51 (EIEE51) [MIM:617339] |
|
rs886037776
|
Pathogenic |
Autism spectrum disorder [MedGen:C1510586,Orphanet:ORPHA106]; Chromosome 9q deletion syndrome [MedGen:C0795833,OMIM:610253,Orphanet:ORPHA261494] |
hsa00280
|
Valine, leucine and isoleucine degradation
|
dbSNP |
Type |
Disease name |
|
-
|
Likely pathogenic |
Medium-chain acyl-coenzyme A dehydrogenase deficiency [MedGen:C0220710,OMIM:201450,Orphanet:ORPHA42,SNOMED CT:128596003] |
|
-
|
Disease |
Succinyl-CoA:3-oxoacid CoA transferase deficiency (SCOTD) [MIM:245050] |
|
-
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs1014048269
|
- |
- |
|
rs1025180934
|
- |
- |
|
rs104886492
|
Unclassified |
HDS10 mitochondrial disease (HSD10MD) [MIM:300438] |
|
rs1057516564
|
Likely pathogenic |
Medium-chain acyl-coenzyme A dehydrogenase deficiency [MedGen:C0220710,OMIM:201450,Orphanet:ORPHA42,SNOMED CT:128596003] |
|
rs1114167288
|
Pathogenic |
Beta-hydroxyisobutyryl-CoA deacylase deficiency [MedGen:C0342738,OMIM:250620,Orphanet:ORPHA88639,SNOMED CT:237958002] |
|
rs120074140
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs120074141
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs120074144
|
Pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs120074146
|
- |
- |
|
rs120074146
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs120074147
|
- |
- |
|
rs120074147
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs120074148
|
Pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007] |
|
rs1202368985
|
- |
- |
|
rs121434275
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434278
|
- |
- |
|
rs121434278
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434279
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434281
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434283
|
Disease |
Acyl-CoA dehydrogenase medium-chain deficiency (ACADMD) [MIM:201450] |
|
rs121434578
|
Pathogenic |
Gamma-aminobutyric acid transaminase deficiency [MedGen:C0342708,OMIM:613163,Orphanet:ORPHA2066,SNOMED CT:237941007] |
|
rs121434636
|
Pathogenic |
3-Methylglutaconic aciduria type 1 [MedGen:C0342727,OMIM:250950,Orphanet:ORPHA67046] |
|
rs121909301
|
Disease |
Succinyl-CoA:3-oxoacid CoA transferase deficiency (SCOTD) [MIM:245050] |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs121918329
|
Disease |
3-hydroxyisobutryl-CoA hydrolase deficiency (HIBCHD) [MIM:250620] |
|
rs121964988
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964991
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964993
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964997
|
Pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007]; not provided [MedGen:CN517202] |
|
rs1220952473
|
- |
- |
|
rs122461163
|
Pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
|
rs1265872256
|
- |
- |
|
rs1289541397
|
- |
- |
|
rs1327401976
|
Disease |
Succinyl-CoA:3-oxoacid CoA transferase deficiency (SCOTD) [MIM:245050] |
|
rs1330753702
|
- |
- |
|
rs1330995774
|
Pathogenic |
Gamma-aminobutyric acid transaminase deficiency [MedGen:C0342708,OMIM:613163,Orphanet:ORPHA2066,SNOMED CT:237941007] |
|
rs1357271377
|
Unclassified |
A colorectal cancer sample |
|
rs1357942068
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs137852640
|
Pathogenic |
mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase deficiency [MedGen:C2751532,OMIM:605911,Orphanet:ORPHA35701] |
|
rs137853096
|
Disease |
D-bifunctional protein deficiency (DBPD) [MIM:261515] |
|
rs137853101
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs137853102
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs141786030
|
Polymorphism |
- |
|
rs1420321267
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs145889928
|
- |
- |
|
rs1462472677
|
Likely pathogenic |
Medium-chain acyl-coenzyme A dehydrogenase deficiency [MedGen:C0220710,OMIM:201450,Orphanet:ORPHA42,SNOMED CT:128596003] |
|
rs1467808566
|
- |
- |
|
rs1467902610
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs148639841
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs149229670
|
- |
- |
|
rs1553132209
|
Pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007] |
|
rs1553499757
|
Likely pathogenic |
Beta-hydroxyisobutyryl-CoA deacylase deficiency [MedGen:C0342738,OMIM:250620,Orphanet:ORPHA88639,SNOMED CT:237958002] |
|
rs182923857
|
Disease |
Maple syrup urine disease 1A (MSUD1A) [MIM:248600] |
|
rs191644614
|
- |
- |
|
rs199524907
|
Pathogenic/Likely pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs199587895
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs200030276
|
Likely pathogenic |
3-Methylglutaconic aciduria type 1 [MedGen:C0342727,OMIM:250950,Orphanet:ORPHA67046] |
|
rs200189529
|
Likely pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007] |
|
rs200207185
|
- |
- |
|
rs200955062
|
- |
- |
|
rs202015012
|
- |
- |
|
rs28935475
|
Pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
|
rs28935476
|
Pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
|
rs35128788
|
- |
- |
|
rs367938014
|
- |
- |
|
rs368127499
|
- |
- |
|
rs368688262
|
- |
- |
|
rs371807385
|
- |
- |
|
rs371834662
|
- |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs377316171
|
- |
- |
|
rs387906755
|
Pathogenic |
3-Methylglutaconic aciduria type 1 [MedGen:C0342727,OMIM:250950,Orphanet:ORPHA67046]; not provided [MedGen:CN517202] |
|
rs387906756
|
Pathogenic |
3-Methylglutaconic aciduria type 1 [MedGen:C0342727,OMIM:250950,Orphanet:ORPHA67046] |
|
rs398123503
|
Disease |
Maple syrup urine disease 1A (MSUD1A) [MIM:248600] |
|
rs398123675
|
Pathogenic |
Maple syrup urine disease [MeSH:D008375,MedGen:C0024776,OMIM:248600,Orphanet:ORPHA511,SNOMED CT:27718001] |
|
rs540242322
|
- |
- |
|
rs561279065
|
- |
- |
|
rs56199635
|
Polymorphism |
- |
|
rs62626305
|
Pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
|
rs727503963
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs74428123
|
- |
- |
|
rs748303093
|
Likely pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs748337518
|
- |
- |
|
rs748725086
|
- |
- |
|
rs753816946
|
- |
- |
|
rs755255464
|
- |
- |
|
rs760106433
|
Disease |
3-hydroxy-3-methylglutaryl-CoA lyase deficiency (HMGCLD) [MIM:246450] |
|
rs764039230
|
- |
- |
|
rs765198174
|
Likely pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007] |
|
rs765582096
|
- |
- |
|
rs769688327
|
Disease |
Maple syrup urine disease 1A (MSUD1A) [MIM:248600] |
|
rs769894315
|
Disease |
3-methylglutaconic aciduria 1 (MGA1) [MIM:250950] |
|
rs770114459
|
Pathogenic |
Beta-hydroxyisobutyryl-CoA deacylase deficiency [MedGen:C0342738,OMIM:250620,Orphanet:ORPHA88639,SNOMED CT:237958002] |
|
rs770225915
|
Likely pathogenic |
Deficiency of hydroxymethylglutaryl-CoA lyase [MedGen:C0268601,OMIM:246450,SNOMED CT:124611007] |
|
rs773048903
|
Pathogenic |
Maple syrup urine disease [MeSH:D008375,MedGen:C0024776,OMIM:248600,Orphanet:ORPHA511,SNOMED CT:27718001] |
|
rs773503933
|
- |
- |
|
rs776400068
|
- |
- |
|
rs780634137
|
- |
- |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs869312125
|
Pathogenic |
Maple syrup urine disease [MeSH:D008375,MedGen:C0024776,OMIM:248600,Orphanet:ORPHA511,SNOMED CT:27718001] |
|
rs875989867
|
Pathogenic |
Medium-chain acyl-coenzyme A dehydrogenase deficiency [MedGen:C0220710,OMIM:201450,Orphanet:ORPHA42,SNOMED CT:128596003] |
|
rs886037927
|
Likely pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
|
rs886041122
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
rn00281
|
Geraniol degradation
|
dbSNP |
Type |
Disease name |
|
rs104886492
|
Unclassified |
HDS10 mitochondrial disease (HSD10MD) [MIM:300438] |
|
rs1202368985
|
- |
- |
|
rs137853096
|
Disease |
D-bifunctional protein deficiency (DBPD) [MIM:261515] |
|
rs137853101
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs137853102
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs371834662
|
- |
- |
|
rs74428123
|
- |
- |
|
rs886037927
|
Likely pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
hsa00290
|
Valine, leucine and isoleucine biosynthesis
|
dbSNP |
Type |
Disease name |
|
rs1467808566
|
- |
- |
|
rs765582096
|
- |
- |
|
rs780634137
|
- |
- |
rn00300
|
Lysine biosynthesis
|
dbSNP |
Type |
Disease name |
|
rs118203916
|
Pathogenic |
Tyrosinemia type 2 [MedGen:C0268487,OMIM:276600,Orphanet:ORPHA28378] |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs1239594775
|
- |
- |
|
rs181309650
|
- |
- |
|
rs201835306
|
- |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs556400964
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs762922297
|
- |
- |
|
rs768158086
|
- |
- |
|
rs773503933
|
- |
- |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
hsa00310
|
Lysine degradation
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Sotos syndrome 1 (SOTOS1) [MIM:117550] |
|
-
|
Disease |
Weaver syndrome (WVS) [MIM:277590] |
|
-
|
Unclassified |
Mental retardation, autosomal dominant 51 (MRD51) [MIM:617788] |
|
rs104886492
|
Unclassified |
HDS10 mitochondrial disease (HSD10MD) [MIM:300438] |
|
rs1057519904
|
Disease |
Glioma (GLM) [MIM:137800] |
|
rs1057519904
|
Likely pathogenic |
Brainstem glioma [Human Phenotype Ontology:HP:0010796,MedGen:C0677865]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037] |
|
rs1057519905
|
Likely pathogenic |
Brainstem glioma [Human Phenotype Ontology:HP:0010796,MedGen:C0677865]; Squamous cell carcinoma of the head and neck [MeSH:C535575,MedGen:C1168401,OMIM:275355,Orphanet:ORPHA67037] |
|
rs1060503430
|
Likely pathogenic |
Weaver syndrome [MedGen:C0265210,OMIM:277590,SNOMED CT:63119004] |
|
rs1131692184
|
Likely pathogenic |
Weaver syndrome [MedGen:C0265210,OMIM:277590,SNOMED CT:63119004] |
|
rs118203916
|
Pathogenic |
Tyrosinemia type 2 [MedGen:C0268487,OMIM:276600,Orphanet:ORPHA28378] |
|
rs120074141
|
Disease |
3-ketothiolase deficiency (3KTD) [MIM:203750] |
|
rs1202368985
|
- |
- |
|
rs121434578
|
Pathogenic |
Gamma-aminobutyric acid transaminase deficiency [MedGen:C0342708,OMIM:613163,Orphanet:ORPHA2066,SNOMED CT:237941007] |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs121964988
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964991
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs121964993
|
Disease |
Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] |
|
rs1239594775
|
- |
- |
|
rs1330995774
|
Pathogenic |
Gamma-aminobutyric acid transaminase deficiency [MedGen:C0342708,OMIM:613163,Orphanet:ORPHA2066,SNOMED CT:237941007] |
|
rs137852727
|
Pathogenic |
Chromosome 9q deletion syndrome [MedGen:C0795833,OMIM:610253,Orphanet:ORPHA261494] |
|
rs137853096
|
Disease |
D-bifunctional protein deficiency (DBPD) [MIM:261515] |
|
rs137853101
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs137853102
|
Disease |
3-alpha-hydroxyacyl-CoA dehydrogenase deficiency (HADH deficiency) [MIM:231530] |
|
rs140332014
|
- |
- |
|
rs1422752351
|
Pathogenic/Likely pathogenic |
Kabuki syndrome [MedGen:C0796004,Orphanet:ORPHA2322,SNOMED CT:313426007]; Kabuki syndrome 1 [MedGen:CN030661,OMIM:147920] |
|
rs145712373
|
- |
- |
|
rs1478147351
|
Unclassified |
Leukemia, acute lymphoblastic (ALL) [MIM:613065] |
|
rs150321966
|
Pathogenic/Likely pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277]; not provided [MedGen:CN517202] |
|
rs1555028104
|
Pathogenic |
MENTAL RETARDATION, AUTOSOMAL DOMINANT 51 [MedGen:C4540474,OMIM:617788] |
|
rs1740231
|
Polymorphism |
- |
|
rs181309650
|
- |
- |
|
rs189221845
|
- |
- |
|
rs193921147
|
Disease |
Weaver syndrome (WVS) [MIM:277590] |
|
rs200207185
|
- |
- |
|
rs201215666
|
- |
- |
|
rs201563672
|
- |
- |
|
rs201626990
|
- |
- |
|
rs201835306
|
- |
- |
|
rs201865375
|
- |
- |
|
rs201865375
|
Pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277] |
|
rs202015012
|
- |
- |
|
rs202071047
|
- |
- |
|
rs202107611
|
- |
- |
|
rs202168145
|
- |
- |
|
rs202214913
|
- |
- |
|
rs267601394
|
Polymorphism |
- |
|
rs267601394
|
Likely pathogenic |
Lymphoma [Human Phenotype Ontology:HP:0002665,MeSH:D008223,MedGen:C0024299,Orphanet:ORPHA223735]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Non-Hodgkin lymphoma [Human Phenotype Ontology:HP:0012539,MedGen:C0024305,OMIM:605027,Orphanet:ORPHA547,SNOMED CT:1929004] |
|
rs267601395
|
Polymorphism |
- |
|
rs267601395
|
Likely pathogenic |
Lymphoma [Human Phenotype Ontology:HP:0002665,MeSH:D008223,MedGen:C0024299,Orphanet:ORPHA223735]; Malignant melanoma of skin [MeSH:C562393,MedGen:C0151779,SNOMED CT:93655004]; Non-Hodgkin lymphoma [Human Phenotype Ontology:HP:0012539,MedGen:C0024305,OMIM:605027,Orphanet:ORPHA547,SNOMED CT:1929004] |
|
rs367902441
|
- |
- |
|
rs371582393
|
Likely pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277] |
|
rs371807385
|
- |
- |
|
rs371834662
|
- |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs375032130
|
Pathogenic/Likely pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277]; not provided [MedGen:CN517202] |
|
rs556400964
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs575069462
|
- |
- |
|
rs587783625
|
Unclassified |
Weaver syndrome (WVS) [MIM:277590] |
|
rs587783700
|
Likely pathogenic |
Kabuki syndrome 1 [MedGen:CN030661,OMIM:147920] |
|
rs587783702
|
Likely pathogenic |
Kabuki syndrome 1 [MedGen:CN030661,OMIM:147920] |
|
rs587784160
|
Pathogenic |
Sotos syndrome 1 [MedGen:C4551477,OMIM:117550] |
|
rs587784171
|
Pathogenic/Likely pathogenic |
Sotos syndrome 1 [MedGen:C4551477,OMIM:117550]; not provided [MedGen:CN517202] |
|
rs587784176
|
Disease |
Sotos syndrome 1 (SOTOS1) [MIM:117550] |
|
rs587784176
|
Pathogenic |
Beckwith-Wiedemann syndrome [MedGen:C0004903,OMIM:130650,Orphanet:ORPHA116,SNOMED CT:81780002]; Sotos syndrome 1 [MedGen:C4551477,OMIM:117550]; not provided [MedGen:CN517202] |
|
rs587784177
|
Disease |
Sotos syndrome 1 (SOTOS1) [MIM:117550] |
|
rs587784177
|
Pathogenic/Likely pathogenic |
Delayed gross motor development [Human Phenotype Ontology:HP:0002194,MedGen:C1837658]; Delayed speech and language development [Human Phenotype Ontology:HP:0000750,MedGen:C0454644]; Delayed speech and language development [Human Phenotype Ontology:HP:0000750,MedGen:C0454644]; Global developmental delay [Human Phenotype Ontology:HP:0001263,MedGen:C0557874]; High anterior hairline [Human Phenotype Ontology:HP:0009890,MedGen:C3276036]; High forehead [Human Phenotype Ontology:HP:0000348,MedGen:C0239676]; Hypertelorism [Human Phenotype Ontology:HP:0000316,MedGen:C0020534,OMIM:145400]; Hypoplasia of the corpus callosum [Human Phenotype Ontology:HP:0002079,MedGen:C0344482]; Increased body weight [Human Phenotype Ontology:HP:0004324,MedGen:C0043094]; Macrocephalus [Human Phenotype Ontology:HP:0000256,MedGen:C3806412,OMIM:248000]; Osteopenia [Human Phenotype Ontology:HP:0000938,MedGen:C0029453]; Overgrowth [Human Phenotype Ontology:HP:0001548,MedGen:C1849265]; Pointed chin [Human Phenotype Ontology:HP:0000307,MedGen:C1844505]; Preeclampsia [Gene:5177,Human Phenotype Ontology:HP:0100602,MedGen:C0032914,OMIM:189800,Orphanet:ORPHA275555]; Scoliosis [Human Phenotype Ontology:HP:0002650,MedGen:C0036439]; Sotos syndrome 1 [MedGen:C4551477,OMIM:117550]; Tall stature [Human Phenotype Ontology:HP:0000098,MedGen:C0241240]; not provided [MedGen:CN517202] |
|
rs587784178
|
Pathogenic |
Sotos syndrome 1 [MedGen:C4551477,OMIM:117550] |
|
rs74428123
|
- |
- |
|
rs745423719
|
- |
- |
|
rs748303093
|
Likely pathogenic |
Deficiency of acetyl-CoA acetyltransferase [MedGen:C1536500,OMIM:203750,Orphanet:ORPHA134,SNOMED CT:124258007]; not provided [MedGen:CN517202] |
|
rs748725086
|
- |
- |
|
rs7520453
|
- |
- |
|
rs753816946
|
- |
- |
|
rs758723288
|
Likely pathogenic |
Mitochondrial short-chain enoyl-coa hydratase 1 deficiency [MedGen:C4225391,OMIM:616277] |
|
rs758809828
|
- |
- |
|
rs759251420
|
- |
- |
|
rs759307844
|
- |
- |
|
rs762922297
|
- |
- |
|
rs768158086
|
- |
- |
|
rs770911084
|
- |
- |
|
rs773503933
|
- |
- |
|
rs776400068
|
- |
- |
|
rs797045825
|
Disease |
Sotos syndrome 1 (SOTOS1) [MIM:117550] |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs886037776
|
Pathogenic |
Autism spectrum disorder [MedGen:C1510586,Orphanet:ORPHA106]; Chromosome 9q deletion syndrome [MedGen:C0795833,OMIM:610253,Orphanet:ORPHA261494] |
|
rs886037927
|
Likely pathogenic |
2-methyl-3-hydroxybutyric aciduria [MedGen:C3266731,OMIM:300438] |
|
rs886041219
|
Pathogenic |
Sotos syndrome 1 [MedGen:C4551477,OMIM:117550]; not provided [MedGen:CN517202] |
hsa00330
|
Arginine and proline metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Argininemia (ARGIN) [MIM:207800] |
|
-
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs104893943
|
Disease |
Argininemia (ARGIN) [MIM:207800] |
|
rs104893947
|
Pathogenic |
Arginase deficiency [MedGen:C0268548,OMIM:207800,Orphanet:ORPHA90,SNOMED CT:23501004]; not provided [MedGen:CN517202] |
|
rs104894694
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs113576450
|
- |
- |
|
rs1210644702
|
- |
- |
|
rs121434583
|
Disease |
Cutis laxa, autosomal recessive, 3A (ARCL3A) [MIM:219150] |
|
rs121909272
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs1235382146
|
- |
- |
|
rs1239594775
|
- |
- |
|
rs1345105436
|
- |
- |
|
rs1371496558
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs1373919219
|
- |
- |
|
rs137852937
|
Disease |
Hyperprolinemia 2 (HYRPRO2) [MIM:239510] |
|
rs138207257
|
Disease |
Hyperoxaluria primary 3 (HP3) [MIM:613616] |
|
rs13894
|
Polymorphism |
- |
|
rs140778208
|
Polymorphism |
- |
|
rs141292408
|
- |
- |
|
rs142814307
|
Disease |
Cerebral creatine deficiency syndrome 3 (CCDS3) [MIM:612718] |
|
rs143550642
|
- |
- |
|
rs1441030187
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs1447665588
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs1453838176
|
- |
- |
|
rs1467790706
|
- |
- |
|
rs150338273
|
Polymorphism |
- |
|
rs189919790
|
- |
- |
|
rs192178446
|
- |
- |
|
rs192820773
|
- |
- |
|
rs200529020
|
Likely pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs200833152
|
Polymorphism |
- |
|
rs201023253
|
- |
- |
|
rs201835306
|
- |
- |
|
rs267607076
|
Disease |
X-linked syndromic mental retardation Snyder-Robinson type (MRXSSR) [MIM:309583] |
|
rs370421531
|
Pathogenic |
Cerebral creatine deficiency syndrome [MedGen:CN227588,Orphanet:ORPHA79172]; Deficiency of guanidinoacetate methyltransferase [MedGen:C0574080,OMIM:612736,Orphanet:ORPHA382,SNOMED CT:124239003]; not provided [MedGen:CN517202] |
|
rs372027428
|
Polymorphism |
- |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs373239891
|
- |
- |
|
rs376921959
|
- |
- |
|
rs376982466
|
Disease |
Cerebral creatine deficiency syndrome 3 (CCDS3) [MIM:612718] |
|
rs377578020
|
Disease |
Cerebral creatine deficiency syndrome 3 (CCDS3) [MIM:612718] |
|
rs397514708
|
Pathogenic |
Arginine:glycine amidinotransferase deficiency [MedGen:C2675179,OMIM:612718,Orphanet:ORPHA35704] |
|
rs397515551
|
Pathogenic |
Snyder Robinson syndrome [MedGen:C0796160,OMIM:309583,Orphanet:ORPHA3063] |
|
rs397515552
|
Pathogenic |
Snyder Robinson syndrome [MedGen:C0796160,OMIM:309583,Orphanet:ORPHA3063] |
|
rs537043237
|
Likely pathogenic |
Cutis laxa-corneal clouding-oligophrenia syndrome [MedGen:C0268354,OMIM:219150,Orphanet:ORPHA2962,SNOMED CT:238826008,SNOMED CT:59252009] |
|
rs556400964
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs565428059
|
- |
- |
|
rs565509522
|
- |
- |
|
rs745614904
|
- |
- |
|
rs746419489
|
Pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs747608698
|
- |
- |
|
rs749670133
|
- |
- |
|
rs752669339
|
Disease |
Spastic paraplegia 9B, autosomal recessive (SPG9B) [MIM:616586] |
|
rs754049561
|
- |
- |
|
rs756168752
|
- |
- |
|
rs756489804
|
Pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs757697327
|
- |
- |
|
rs758595075
|
Pathogenic |
Leukodystrophy, hypomyelinating, 10 [MedGen:C4225332,OMIM:616420] |
|
rs759180800
|
- |
- |
|
rs761254332
|
- |
- |
|
rs761288637
|
- |
- |
|
rs761363806
|
- |
- |
|
rs761372150
|
- |
- |
|
rs762271422
|
Likely pathogenic |
Spastic paraplegia 5A [MedGen:C1849115,OMIM:270800,Orphanet:ORPHA100986] |
|
rs762601763
|
- |
- |
|
rs762922297
|
- |
- |
|
rs763764381
|
- |
- |
|
rs763887405
|
- |
- |
|
rs764145947
|
- |
- |
|
rs764224799
|
- |
- |
|
rs765070826
|
- |
- |
|
rs766264810
|
Disease |
Spastic paraplegia 9A, autosomal dominant (SPG9A) [MIM:601162] |
|
rs766553422
|
- |
- |
|
rs770442555
|
- |
- |
|
rs770665220
|
- |
- |
|
rs773503933
|
- |
- |
|
rs774047299
|
Disease |
Cutis laxa, autosomal recessive, 3A (ARCL3A) [MIM:219150] |
|
rs774144200
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs796052088
|
Pathogenic |
Primary hyperoxaluria, type III [MedGen:C3150878,OMIM:613616,Orphanet:ORPHA93600] |
|
rs80338734
|
Disease |
Cerebral creatine deficiency syndrome 2 (CCDS2) [MIM:612736] |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs869320690
|
Disease |
Spastic paraplegia 9B, autosomal recessive (SPG9B) [MIM:616586] |
|
rs886037933
|
Pathogenic |
Leukodystrophy, hypomyelinating, 10 [MedGen:C4225332,OMIM:616420] |
|
rs886054247
|
Likely pathogenic |
Deficiency of guanidinoacetate methyltransferase [MedGen:C0574080,OMIM:612736,Orphanet:ORPHA382,SNOMED CT:124239003] |
|
rs900794676
|
- |
- |
|
rs923744167
|
- |
- |
rn00332
|
Carbapenem biosynthesis
|
dbSNP |
Type |
Disease name |
|
rs121434583
|
Disease |
Cutis laxa, autosomal recessive, 3A (ARCL3A) [MIM:219150] |
|
rs141292408
|
- |
- |
|
rs373239891
|
- |
- |
|
rs537043237
|
Likely pathogenic |
Cutis laxa-corneal clouding-oligophrenia syndrome [MedGen:C0268354,OMIM:219150,Orphanet:ORPHA2962,SNOMED CT:238826008,SNOMED CT:59252009] |
|
rs745614904
|
- |
- |
|
rs752669339
|
Disease |
Spastic paraplegia 9B, autosomal recessive (SPG9B) [MIM:616586] |
|
rs756168752
|
- |
- |
|
rs762271422
|
Likely pathogenic |
Spastic paraplegia 5A [MedGen:C1849115,OMIM:270800,Orphanet:ORPHA100986] |
|
rs764145947
|
- |
- |
|
rs766264810
|
Disease |
Spastic paraplegia 9A, autosomal dominant (SPG9A) [MIM:601162] |
|
rs770442555
|
- |
- |
|
rs774047299
|
Disease |
Cutis laxa, autosomal recessive, 3A (ARCL3A) [MIM:219150] |
|
rs869320690
|
Disease |
Spastic paraplegia 9B, autosomal recessive (SPG9B) [MIM:616586] |
hsa00340
|
Histidine metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
-
|
Disease |
Microphthalmia, isolated, 8 (MCOP8) [MIM:615113] |
|
rs1014551540
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs104894550
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs104894551
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs104894553
|
- |
- |
|
rs104894553
|
Likely pathogenic |
Canavan disease, mild [MedGen:C4017127]; Spongy degeneration of central nervous system [MedGen:C0206307,OMIM:271900,Orphanet:ORPHA141,SNOMED CT:80544005] |
|
rs1057516995
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs115638369
|
- |
- |
|
rs121912707
|
Pathogenic/Likely pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; Seizures [Human Phenotype Ontology:HP:0001250,MedGen:C0036572]; not provided [MedGen:CN517202] |
|
rs121912711
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs12948217
|
Pathogenic |
Canavan Disease, Familial Form [MedGen:C0751663]; Spongy degeneration of central nervous system [MedGen:C0206307,OMIM:271900,Orphanet:ORPHA141,SNOMED CT:80544005]; not provided [MedGen:CN517202] |
|
rs137853207
|
Pathogenic |
Deficiency of aromatic-L-amino-acid decarboxylase [MedGen:C1291564,OMIM:608643,Orphanet:ORPHA35708,SNOMED CT:124600004] |
|
rs137853208
|
Pathogenic |
Deficiency of aromatic-L-amino-acid decarboxylase [MedGen:C1291564,OMIM:608643,Orphanet:ORPHA35708,SNOMED CT:124600004] |
|
rs137853209
|
Pathogenic |
Deficiency of aromatic-L-amino-acid decarboxylase [MedGen:C1291564,OMIM:608643,Orphanet:ORPHA35708,SNOMED CT:124600004] |
|
rs137853210
|
Pathogenic |
Deficiency of aromatic-L-amino-acid decarboxylase [MedGen:C1291564,OMIM:608643,Orphanet:ORPHA35708,SNOMED CT:124600004] |
|
rs137853212
|
Pathogenic |
Deficiency of aromatic-L-amino-acid decarboxylase [MedGen:C1291564,OMIM:608643,Orphanet:ORPHA35708,SNOMED CT:124600004] |
|
rs1414684396
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs142034862
|
- |
- |
|
rs144106544
|
- |
- |
|
rs1446467099
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs1454273149
|
- |
- |
|
rs147763700
|
Likely pathogenic |
Spongy degeneration of central nervous system [MedGen:C0206307,OMIM:271900,Orphanet:ORPHA141,SNOMED CT:80544005] |
|
rs148563375
|
- |
- |
|
rs192178446
|
- |
- |
|
rs200600524
|
- |
- |
|
rs201907439
|
- |
- |
|
rs28940279
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs372660425
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006]; not provided [MedGen:CN517202] |
|
rs374724805
|
Pathogenic |
GLUTAMATE FORMIMINOTRANSFERASE DEFICIENCY [MedGen:C0268609,OMIM:229100,Orphanet:ORPHA51208,SNOMED CT:59761008] |
|
rs375736464
|
Likely pathogenic |
Spongy degeneration of central nervous system [MedGen:C0206307,OMIM:271900,Orphanet:ORPHA141,SNOMED CT:80544005] |
|
rs375990689
|
- |
- |
|
rs376854191
|
Polymorphism |
- |
|
rs547918064
|
- |
- |
|
rs561027881
|
- |
- |
|
rs61755740
|
- |
- |
|
rs758252808
|
Disease |
Mental retardation, autosomal recessive 51 (MRT51) [MIM:616739] |
|
rs761288637
|
- |
- |
|
rs762601763
|
- |
- |
|
rs763959573
|
- |
- |
|
rs770706390
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs771317809
|
Pathogenic/Likely pathogenic |
Deficiency of aromatic-L-amino-acid decarboxylase [MedGen:C1291564,OMIM:608643,Orphanet:ORPHA35708,SNOMED CT:124600004]; not provided [MedGen:CN517202] |
|
rs773049803
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs773503933
|
- |
- |
|
rs774323189
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs776777887
|
Disease |
Canavan disease (CAND) [MIM:271900] |
|
rs781387185
|
- |
- |
|
rs864622558
|
Pathogenic |
Pyridoxine-dependent epilepsy [MedGen:C1849508,OMIM:266100,Orphanet:ORPHA3006] |
|
rs900794676
|
- |
- |
|
rs937670540
|
Disease |
Canavan disease (CAND) [MIM:271900] |
hsa00350
|
Tyrosine metabolism
|
dbSNP |
Type |
Disease name |
|
-
|
Disease |
Succinic semialdehyde dehydrogenase deficiency (SSADHD) [MIM:271980] |
|
-
|
Disease |
Tyrosinemia 3 (TYRSN3) [MIM:276710] |
|
-
|
Disease |
Microphthalmia, isolated, 8 (MCOP8) [MIM:615113] |
|
rs1041969
|
Polymorphism |
- |
|
rs1126673
|
- |
- |
|
rs115638369
|
- |
- |
|
rs118203916
|
Pathogenic |
Tyrosinemia type 2 [MedGen:C0268487,OMIM:276600,Orphanet:ORPHA28378] |
|
rs118203982
|
Pathogenic |
Succinate-semialdehyde dehydrogenase deficiency [MedGen:C0268631,OMIM:271980,Orphanet:ORPHA22,SNOMED CT:49748000]; not provided [MedGen:CN517202] |
|
rs121965074
|
Likely pathogenic |
Tyrosinemia type I [MedGen:C0268490,OMIM:276700,Orphanet:ORPHA882,SNOMED CT:124536006,SNOMED CT:410056006] |
|
rs1229984
|
Polymorphism |
- |
|
rs1260079066
|
- |
- |
|
rs1326526453
|
- |
- |
|
rs1326526453
|
Disease |
Succinic semialdehyde dehydrogenase deficiency (SSADHD) [MIM:271980] |
|
rs13306279
|
- |
- |
|
rs13306303
|
- |
- |
|
rs137852865
|
Disease |
Tyrosinemia 3 (TYRSN3) [MIM:276710] |
|
rs137853207
|
Pathogenic |
Deficiency of aromatic-L-amino-acid decarboxylase [MedGen:C1291564,OMIM:608643,Orphanet:ORPHA35708,SNOMED CT:124600004] |
 |